View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_6 (Length: 602)
Name: NF19755_low_6
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 267 - 584
Target Start/End: Original strand, 190156 - 190473
Alignment:
| Q |
267 |
aatcagtttcagaaagtgggttgtcaggattatggtttattaattgatagtaaagttttgatttttgaattatttgataagtttcagaaagtgggttatt |
366 |
Q |
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| T |
190156 |
aatcagtttcagaaagtgggttgtcaggattatggtttattgattgatagtaaagttttgatttttgaattatttgataagtttcagaaagtgggttatt |
190255 |
T |
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| Q |
367 |
atgannnnnnnaagatcttaaatcttaaagtaagatggttagaaaaattattcaattgtaaatggaaacatgatgtgtctgaaaagtgtagttaaaaagg |
466 |
Q |
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| T |
190256 |
atgatttttttaagatcttaaatcttaaagtaagatggttagaaaaattattcaattgtaaatggaaacatgatgtgtctgaaaagtgtagttaaaaagg |
190355 |
T |
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| Q |
467 |
tggtgtatgtatctagaaaagtacaggaccaaaattcactgtgttaatgaaaagtagatatatgaaattaatttatgattatttgtacttctttacaata |
566 |
Q |
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| T |
190356 |
tggtgtatgtatctagaaaagtacaggaccaaaattcactgtgttaatgaaaagtagatatatgaaattaatttatgattatttgtacttctttacaata |
190455 |
T |
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| Q |
567 |
catccataccccacttcc |
584 |
Q |
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| T |
190456 |
catccataccccacttcc |
190473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 189902 - 190071
Alignment:
| Q |
14 |
cacagaggaaacttgttactgaagaagaattgcatcttcaagctttatctatggcacttcaacaacattctcagaggtttgaaggttctatgtctagaag |
113 |
Q |
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| T |
189902 |
cacagaggaaacttgttactgaagaagaattgcatcttcaagctttatctatggcacttcaacaacattctcagaggtttgaaggttctatgtctagaag |
190001 |
T |
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| Q |
114 |
aattggttctactagctctagaagacgtactttacctgattctgttccagtcaacaaacaggttctgctc |
183 |
Q |
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| T |
190002 |
aattggttctactagctctagaagacgtactttacctgattctgttccagtcaacaaacaggttctgctc |
190071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 190123 - 190177
Alignment:
| Q |
309 |
attgatagtaaagttttgatttttgaattatttgataagtttcagaaagtgggtt |
363 |
Q |
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| T |
190123 |
attgattgtaaagttttgatttttgaatcatttaatcagtttcagaaagtgggtt |
190177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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