View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_63 (Length: 242)
Name: NF19755_low_63
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_63 |
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| [»] chr6 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 14949528 - 14949637
Alignment:
| Q |
136 |
aataagtgagataatgtgtttgttatatcaaaaaa-ggagagtgtaattaaagttggata--gtggggcactgcagaaaataggagggatctccacgaga |
232 |
Q |
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| T |
14949528 |
aataagtgagataatgtgtttgtaatatcaaaaaaaggagagtgtaattaaaggtggatatagtggggcactccagaagataggagggatctccacgaga |
14949627 |
T |
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| Q |
233 |
gaggatccac |
242 |
Q |
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|||||||||| |
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| T |
14949628 |
gaggatccac |
14949637 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 14949429 - 14949528
Alignment:
| Q |
9 |
catcactacatacatatatatcaactactaagtcatgcaagaaaaactttagaatat---attttgttaggaaaattaactagatcatatacaagtttgt |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
14949429 |
catccctacatacatatatatcaactactaagtcatgcaag-aaaactttagaatataaaaagttgttaggaaaattaactagatcatatacaagtttgt |
14949527 |
T |
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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 31210820 - 31210704
Alignment:
| Q |
128 |
ctccattaaataagtgagataatgtgtttgttatatcaaaaaag--gagagtgtaattaaagttggatagtggggcactgcagaaaataggagggatctc |
225 |
Q |
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| T |
31210820 |
ctccattaaataggtgagataatgtgtttgtaatatcaaacaacaagagagtataattaaagatggatagtagggcactgcagaaaacaggagggatctc |
31210721 |
T |
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| Q |
226 |
cacgagagaggatccac |
242 |
Q |
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| T |
31210720 |
caccgaagaggatccac |
31210704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 30390293 - 30390161
Alignment:
| Q |
112 |
atgtgtaatccagaccctccattaaataagtgagataatgtgtttgttatatcaaaa--aag-gagagtgtaattaaagttggatagtggggcactgcag |
208 |
Q |
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| T |
30390293 |
atgtgtaatctaagccctccattaaataggtgatagaatgtgtctgtaataataaaaggaagagagagtgtaattaaaggtggattgttaggcaccggag |
30390194 |
T |
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| Q |
209 |
aaaataggagggatctccacgagagaggatccac |
242 |
Q |
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| T |
30390193 |
aaaacatgagggatctccatg-gagaggatccac |
30390161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 2355939 - 2356066
Alignment:
| Q |
112 |
atgtgtaatccagaccctccattaaataagtgagataatgtgtttgttatatcaaaaaaggagagtgtaattaaagttggatagtggggca-ctgcagaa |
210 |
Q |
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| T |
2355939 |
atgtgtaatccagaccctccaatagataggtgagataatgtgtttgtaatatataaaaaaaaaaatgtaattaaagctggatagtgggggagctgcagaa |
2356038 |
T |
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| Q |
211 |
aataggagggatctccacgagagaggat |
238 |
Q |
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| T |
2356039 |
aacaggagggatctccaccggagaggat |
2356066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 4860047 - 4860098
Alignment:
| Q |
112 |
atgtgtaatccagaccctccattaaataagtgagataatgtgtttgttatat |
163 |
Q |
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| T |
4860047 |
atgtgtaatccagaccctccattaaatatgtgagataatgtgtttgtaatat |
4860098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 4880055 - 4880106
Alignment:
| Q |
112 |
atgtgtaatccagaccctccattaaataagtgagataatgtgtttgttatat |
163 |
Q |
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| T |
4880055 |
atgtgtaatccagaccctccattaaatatgtgagataatgtgtttgtaatat |
4880106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 11589384 - 11589454
Alignment:
| Q |
172 |
gagagtgtaattaaagttggatagtggggcactgcagaaaataggagggatctccacgagagaggatccac |
242 |
Q |
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| T |
11589384 |
gagagtgtaattaaaggtggatgatgggccacagcagaaaacaggagagatctccatcggagaggatccac |
11589454 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 13424441 - 13424557
Alignment:
| Q |
126 |
ccctccattaaataagtgagataatgtgtttgttatatcaaaaaag--gagagtgtaattaaagttggatagtggggcactgcagaaaataggagggatc |
223 |
Q |
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| T |
13424441 |
ccctccattaaattggtgaaagaatgtgtttgtaataataaaaagggagagagcgtaattaaagatggatagttagacatcgcagaaaattggagagatc |
13424540 |
T |
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| Q |
224 |
tccacgagagaggatcc |
240 |
Q |
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| T |
13424541 |
tccacttgagaggatcc |
13424557 |
T |
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