View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_67 (Length: 237)
Name: NF19755_low_67
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 42155592 - 42155799
Alignment:
| Q |
16 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaactttggcaatcattttccaacaagacaatgcatgctttgtgggtattttcccgttgtt |
115 |
Q |
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| T |
42155592 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaactttggcaatcgttttccaacaagacaatgcatgctttgtgggtattttcccgttgtt |
42155691 |
T |
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| Q |
116 |
agtggttccataaacctgtaatcaatgttacaaacaggnnnnnnnnnnnnnncaatttcacgaacaattattattttttagaagtactatacaatatagt |
215 |
Q |
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| T |
42155692 |
agtggttccataaacctgtaatcaatgttacaaacagggaaaaaataaaaaacaatttcacgaacaattattattttttagaagtactatacaatatagt |
42155791 |
T |
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| Q |
216 |
ccaacaaa |
223 |
Q |
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|||||||| |
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| T |
42155792 |
ccaacaaa |
42155799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 42165747 - 42165880
Alignment:
| Q |
16 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaactttggcaatcattttccaacaagacaatgcatgctttgtgggtattttcccgttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||| ||| ||||||||||||||| |
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| T |
42165747 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaaatttggcaatcgttttccaacaagggaacgcatgctttttggatattttcccgttgtt |
42165846 |
T |
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| Q |
116 |
agtggttccataaacctgtaatcaatgttacaaa |
149 |
Q |
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| T |
42165847 |
agtggttccatgaacctgtaatcattgttacaaa |
42165880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 42291665 - 42291532
Alignment:
| Q |
16 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaactttggcaatcattttccaacaagacaatgcatgctttgtgggtattttcccgttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||| |||| || ||||| |
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| T |
42291665 |
atcaaatgaccctttaagtagtcttgcttgctttttagagaaatttggcaatcgttttccaacaagagaacgcatgctttgtggatattccccttttgtt |
42291566 |
T |
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| Q |
116 |
agtggttccataaacctgtaatcaatgttacaaa |
149 |
Q |
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|||||||||||| ||||||||||| | ||||||| |
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| T |
42291565 |
agtggttccatatacctgtaatcatttttacaaa |
42291532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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