View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19755_low_7 (Length: 584)
Name: NF19755_low_7
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 42212398 - 42211862
Alignment:
| Q |
19 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggtta |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212398 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgtttgcaaaagtgtctgctgtgttttagggcaggttc |
42212307 |
T |
|
| Q |
119 |
tgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcataattgacaccatcagaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212306 |
tgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcataattgacaccatcagaaca |
42212207 |
T |
|
| Q |
219 |
atgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatcgactg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212206 |
atgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttcaagagatataggacatcgaaaatcgactg |
42212107 |
T |
|
| Q |
319 |
gtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212106 |
gtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgag |
42212007 |
T |
|
| Q |
419 |
acggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatgcaact |
518 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212006 |
acggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatgcaact |
42211915 |
T |
|
| Q |
519 |
tctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42211914 |
tctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42211862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 42203530 - 42202994
Alignment:
| Q |
19 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggtta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42203530 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggatgtatgcaaaagtgtctgctgtgttttagggcaggttc |
42203439 |
T |
|
| Q |
119 |
tgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcataattgacaccatcagaaca |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203438 |
tgtgaccagcatcaagccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcataattgacaccatcagaaca |
42203339 |
T |
|
| Q |
219 |
atgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatcgactg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203338 |
atgtttcgcacaaaaaggattgtggataatacctgaccggtggagacaattataggatctttcattagttcaagagatataggacatcgaaaatcgactg |
42203239 |
T |
|
| Q |
319 |
gtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203238 |
gtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgag |
42203139 |
T |
|
| Q |
419 |
acggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatgcaact |
518 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42203138 |
acggtttcaaaactg--------tcttctagttctccgttgcctattatgaccaattcgtgtaattcttagtcctcagatgcagcttctcagatgcaact |
42203047 |
T |
|
| Q |
519 |
tctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203046 |
tctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
42202994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 42420849 - 42421306
Alignment:
| Q |
19 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggtta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42420849 |
gctatcacaccataaaccaatcagactcttcaaaacgtagttaggagtaa--------gggttgtttgcaaaagtgtctgctgtgttttagggcaggttc |
42420940 |
T |
|
| Q |
119 |
tgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcataattgacaccatcagaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
42420941 |
tgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaataaagtaggaatttcatcaataatcatagctgacatcatcagaaca |
42421040 |
T |
|
| Q |
219 |
atgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttataggatctttcattagttcaagagatataggacatcgaaaatc----- |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| ||||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42421041 |
ttgtttcgcacaaaaaggattgtcgataatacctgaccggttgagacgattacagggtctttcattagttcaagagatataggacaccgaaaatcatctg |
42421140 |
T |
|
| Q |
314 |
-----------gactggtgcttaattgaaactattctcgctctcatagagtcataggtatcaacctcaggattttctgtgagcacgcagtctttcagttt |
402 |
Q |
| |
|
||| |||||||||||| ||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
42421141 |
ggattacaggagaccggtgcttaattggaac-attctcact--------gtcataggtatcaacctcaggattttctgcgagcacgcagtctttcagttt |
42421231 |
T |
|
| Q |
403 |
cctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgttgcctattatgaccaattcgtgtaattc |
485 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||| ||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
42421232 |
cctaagaagagatgagacggtttcaaaactg--------tctcctagttctccgttgcttgttatgaccaattcatgtaattc |
42421306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 74 - 485
Target Start/End: Complemental strand, 42218332 - 42217915
Alignment:
| Q |
74 |
taagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaat |
173 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
42218332 |
taagggatgtatgcaaaagtgtctactgtattttagggcaggttatgtgaccagcatcaagtcatttttgaatgcaggatctttcatatgtctgcaaaat |
42218233 |
T |
|
| Q |
174 |
aaagtaggaatttcatcaataatcataattgacaccatcagaacaatgtttcgcacaaaaaggattgtggataatacctgacgggtggagacagttatag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| || |
|
|
| T |
42218232 |
aaagtaggaatttcatcaataatcataaccgacaccatcagaacaatgtttcacacaaaaaggattgtggataatacctgaccggttgagacaattacag |
42218133 |
T |
|
| Q |
274 |
gatctttcattagttcaagagatataggacatcgaaaatc----------------gactggtgcttaattgaaactattctcgctctcatagagtcata |
357 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||| || |||| |
|
|
| T |
42218132 |
gatcttcccttaattcaagagatataggacatcgaaaatcctctgggattacacgagaccagtgcttaattgaaac-attcgcgccct--------cata |
42218042 |
T |
|
| Q |
358 |
ggtatcaacctcaggattttctgtgagcacgcagtctttcagtttcctaagaagggatgagacggtttcaaaattgtcttctactcttctagttctccgt |
457 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || || ||| |||||||||||| |
|
|
| T |
42218041 |
ggtatcaaccttaggattttctgcgagcatgcagtttttcagtttcctaagaagggatgagatggtttcaactttcaaaact-gtctcctagttctccgt |
42217943 |
T |
|
| Q |
458 |
tgcctattatgaccaattcgtgtaattc |
485 |
Q |
| |
|
| | | |||||||||||||||||||||| |
|
|
| T |
42217942 |
tactttttatgaccaattcgtgtaattc |
42217915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 571
Target Start/End: Original strand, 42421338 - 42421403
Alignment:
| Q |
506 |
ctcagatgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
571 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42421338 |
ctcagatgcaacttctcagagagtcttttgagtatagcaggatcagggtctttatctttctgtgct |
42421403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 42409034 - 42409172
Alignment:
| Q |
23 |
tcacaccataaaccaatcagactcttcaaaacgtagttaggagtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| ||||||||| ||| | | ||||| ||||||||||||| | ||| ||| |||| |
|
|
| T |
42409034 |
tcacaccataaaccaatcagactcttcaaaacatggttag--------gagtaagggctgtat-ccaaagtatctgctgtgttttcgcgcaagttctgtg |
42409124 |
T |
|
| Q |
123 |
accagcatcatgccatttttgaatgcaggatctttcatatgtctgcaa |
170 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
42409125 |
accagcatcaaataatttttgaatgcaagatctttcatatgtccgcaa |
42409172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 42217878 - 42217818
Alignment:
| Q |
511 |
atgcaacttctcagagagccttttgagtataacaggatcagggtctttatctatctgtgct |
571 |
Q |
| |
|
|||||||||||||| | | |||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
42217878 |
atgcaacttctcagtgggtcttttgaggatagcaggatcagggtctttatctttctgtgct |
42217818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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