View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_70 (Length: 233)
Name: NF19755_low_70
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3816460 - 3816676
Alignment:
| Q |
1 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggag |
100 |
Q |
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| T |
3816460 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggag |
3816559 |
T |
|
| Q |
101 |
ccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattcacataacnnnnnnntgtagaaagc |
200 |
Q |
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| T |
3816560 |
ccacaagcgtataacatgcttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattgacataacaaaaaaatgtagaaagc |
3816659 |
T |
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| Q |
201 |
caatacacgattttaat |
217 |
Q |
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||||||||||||||||| |
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| T |
3816660 |
caatacacgattttaat |
3816676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 346898 - 346716
Alignment:
| Q |
1 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
346898 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggttgatgctgaaggag |
346799 |
T |
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| Q |
101 |
ccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattcacataac |
183 |
Q |
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| T |
346798 |
ccacaagcgtataacatgcttacccaattaaaattgaataatgctaataccggaactgaattaaacccaaatattgacataac |
346716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 48162002 - 48161820
Alignment:
| Q |
1 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48162002 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggag |
48161903 |
T |
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| Q |
101 |
ccacaagcgtataacatgtttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattcacataac |
183 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48161902 |
ccacaagcgtataacatgcttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattgacataac |
48161820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10738533 - 10738600
Alignment:
| Q |
1 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattt |
68 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
10738533 |
ttatatataaattaaatctttttcacaattcaatttggtcaaattaagcaatcacagtatatcaattt |
10738600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10952302 - 10952369
Alignment:
| Q |
1 |
ttatatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattt |
68 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
10952302 |
ttatatataaattaaatctttttcacaattcaatttggtcaaattaagcaatcacagtatatcaattt |
10952369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 10765983 - 10766162
Alignment:
| Q |
4 |
tatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggagcca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10765983 |
tatatgaattaaatcttcataacaattcaatttggtcaaactaagcaatcactgcatatcaattttctcaatacaaagatggctgatgctgaaggagcca |
10766082 |
T |
|
| Q |
104 |
caagcgtataacatgtttacccaattaaaattgaataaagctaataccggaactgaattaaacccaaatattcacataac |
183 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
10766083 |
caagcgtataacatgcttacccaattaaaattgaataaagctaataccggaactgaattaaacgcaaatattgacataac |
10766162 |
T |
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