View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_72 (Length: 228)
Name: NF19755_low_72
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1306440 - 1306240
Alignment:
| Q |
1 |
attgctgattcatttatggttgctgattaaagagatagttcaaaaaacggaattttttcctactagggttttcatcatgtaatcatgttcttttagttga |
100 |
Q |
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| T |
1306440 |
attgctgattcatttatggttgctgattaaagagatagttcaaaaaacggaattttttcctactagggttttcatcatgtaatcatgttcttttagttga |
1306341 |
T |
|
| Q |
101 |
tgacgaaaatgagtattttgagttctagggtttttcactagagtccttcactgattaagttctagggttgttacttttgtcttaggatggagtgaacatg |
200 |
Q |
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| T |
1306340 |
tgacgaaaatgagtattttgagttctagggtttttcactggagtccttcactgattaagttctagggttgttacttttgtcttaggatggagtgaacatg |
1306241 |
T |
|
| Q |
201 |
g |
201 |
Q |
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| |
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| T |
1306240 |
g |
1306240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 1310944 - 1310893
Alignment:
| Q |
6 |
tgattcatttatggttgctgattaaagagatagttcaaaaaacggaattttt |
57 |
Q |
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| T |
1310944 |
tgatccatttatggttgttgattaaagagatagttcataaaatggatttttt |
1310893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 38479178 - 38479093
Alignment:
| Q |
11 |
catttatggttgctgattaaagagatagttcaaaaaacggaattttttcctactagggttttcatcatgtaatcatgttcttttagttga |
100 |
Q |
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||||||||||| |||||||||||||||||||| |||| || |||| | || ||||||| ||||||||||||||||||||| |||| |
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| T |
38479178 |
catttatggttactgattaaagagatagttcagaaaatgggtttttgtgtta----ggttttcttcatgtaatcatgttcttttatttga |
38479093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 38479038 - 38478992
Alignment:
| Q |
131 |
tttttcactagagtccttcactgattaagttctagggttgttacttt |
177 |
Q |
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||||||||| ||||||||||||| |||| |||||||||| ||||||| |
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| T |
38479038 |
tttttcacttgagtccttcactggttaacttctagggtttttacttt |
38478992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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