View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19755_low_77 (Length: 226)

Name: NF19755_low_77
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19755_low_77
NF19755_low_77
[»] chr6 (13 HSPs)
chr6 (1-211)||(3851003-3851212)
chr6 (1-145)||(16447761-16447905)
chr6 (1-143)||(19102469-19102611)
chr6 (1-145)||(21119813-21119957)
chr6 (1-110)||(19024231-19024340)
chr6 (1-98)||(23527307-23527405)
chr6 (141-211)||(19400947-19401016)
chr6 (166-211)||(19769093-19769139)
chr6 (132-166)||(1818849-1818883)
chr6 (1-58)||(14978550-14978607)
chr6 (1-58)||(25618907-25618964)
chr6 (107-139)||(23077519-23077551)
chr6 (107-139)||(35011965-35011997)
[»] chr7 (24 HSPs)
chr7 (1-148)||(3387364-3387511)
chr7 (1-145)||(10062890-10063034)
chr7 (1-145)||(48274402-48274546)
chr7 (1-115)||(9176842-9176956)
chr7 (1-98)||(16496241-16496338)
chr7 (6-115)||(1867245-1867353)
chr7 (1-115)||(14037049-14037162)
chr7 (1-115)||(14347079-14347192)
chr7 (3-115)||(14045621-14045732)
chr7 (3-115)||(14355651-14355762)
chr7 (1-115)||(16324802-16324914)
chr7 (1-70)||(15117364-15117432)
chr7 (1-60)||(15113848-15113906)
chr7 (132-197)||(16250349-16250414)
chr7 (1-60)||(37793399-37793458)
chr7 (177-211)||(3387306-3387340)
chr7 (1-75)||(11768097-11768171)
chr7 (166-211)||(18147667-18147713)
chr7 (168-209)||(11508775-11508816)
chr7 (1-58)||(16997080-16997137)
chr7 (1-58)||(17052769-17052826)
chr7 (1-58)||(42462859-42462916)
chr7 (132-164)||(8930888-8930920)
chr7 (132-172)||(15700855-15700895)
[»] chr8 (28 HSPs)
chr8 (1-145)||(26222338-26222482)
chr8 (1-145)||(26220471-26220615)
chr8 (1-115)||(40492035-40492149)
chr8 (1-115)||(24353896-24354009)
chr8 (1-92)||(22365508-22365599)
chr8 (1-60)||(13507239-13507298)
chr8 (1-60)||(13596771-13596830)
chr8 (1-115)||(17266151-17266264)
chr8 (1-115)||(14102359-14102471)
chr8 (132-211)||(21697580-21697659)
chr8 (132-184)||(22966690-22966742)
chr8 (1-115)||(2418010-2418122)
chr8 (1-98)||(19936247-19936343)
chr8 (1-76)||(22984532-22984607)
chr8 (1-40)||(39834559-39834598)
chr8 (132-166)||(23884066-23884100)
chr8 (1-60)||(17085077-17085136)
chr8 (1-60)||(17085311-17085370)
chr8 (1-98)||(28398436-28398533)
chr8 (132-166)||(36305901-36305935)
chr8 (132-166)||(36732605-36732639)
chr8 (1-58)||(20501237-20501294)
chr8 (1-58)||(20532543-20532600)
chr8 (1-58)||(22996699-22996756)
chr8 (107-139)||(17438788-17438820)
chr8 (107-139)||(19154136-19154168)
chr8 (107-139)||(22365451-22365483)
chr8 (107-139)||(24353861-24353893)
[»] chr5 (11 HSPs)
chr5 (1-145)||(18318191-18318335)
chr5 (1-145)||(20765237-20765380)
chr5 (1-98)||(36315392-36315489)
chr5 (1-115)||(22177354-22177467)
chr5 (132-211)||(24068082-24068161)
chr5 (1-70)||(27988112-27988181)
chr5 (1-60)||(26731991-26732050)
chr5 (1-60)||(26739804-26739863)
chr5 (4-56)||(21327433-21327485)
chr5 (179-211)||(39176426-39176458)
chr5 (132-166)||(1627039-1627073)
[»] chr4 (17 HSPs)
chr4 (1-145)||(54797893-54798037)
chr4 (1-145)||(14281169-14281313)
chr4 (132-208)||(15239937-15240013)
chr4 (132-211)||(3837983-3838062)
chr4 (1-115)||(53081310-53081423)
chr4 (132-211)||(20150678-20150757)
chr4 (1-112)||(26790190-26790300)
chr4 (179-211)||(11153798-11153830)
chr4 (8-60)||(14852038-14852090)
chr4 (1-115)||(12841495-12841609)
chr4 (1-58)||(12611897-12611954)
chr4 (53-110)||(15867929-15867986)
chr4 (65-98)||(16043905-16043938)
chr4 (1-58)||(23802413-23802470)
chr4 (107-139)||(15867994-15868026)
chr4 (166-209)||(23974109-23974153)
chr4 (107-139)||(32852214-32852246)
[»] scaffold0022 (2 HSPs)
scaffold0022 (1-145)||(117349-117493)
scaffold0022 (1-115)||(128105-128219)
[»] chr3 (22 HSPs)
chr3 (1-145)||(21619301-21619445)
chr3 (1-145)||(36167450-36167594)
chr3 (1-145)||(10551223-10551367)
chr3 (1-139)||(43927913-43928051)
chr3 (1-98)||(28195478-28195575)
chr3 (1-110)||(10557663-10557772)
chr3 (1-112)||(21838308-21838418)
chr3 (1-115)||(45219419-45219531)
chr3 (1-69)||(23275541-23275609)
chr3 (1-84)||(17738142-17738225)
chr3 (1-92)||(19039454-19039545)
chr3 (141-211)||(49968989-49969058)
chr3 (169-211)||(15777405-15777447)
chr3 (1-112)||(22109488-22109598)
chr3 (1-58)||(9578533-9578590)
chr3 (172-209)||(9733690-9733727)
chr3 (1-58)||(11202209-11202266)
chr3 (1-110)||(14502002-14502111)
chr3 (1-58)||(50243799-50243856)
chr3 (107-139)||(14501962-14501994)
chr3 (132-172)||(24177890-24177930)
chr3 (4-48)||(53300835-53300879)
[»] chr2 (12 HSPs)
chr2 (1-145)||(43138177-43138321)
chr2 (1-145)||(24941501-24941645)
chr2 (1-115)||(23005602-23005715)
chr2 (1-115)||(25109720-25109833)
chr2 (1-115)||(23792126-23792239)
chr2 (1-70)||(22458697-22458765)
chr2 (1-60)||(19672754-19672813)
chr2 (1-60)||(26393308-26393367)
chr2 (1-98)||(27845505-27845602)
chr2 (132-211)||(34491365-34491444)
chr2 (1-60)||(18546150-18546209)
chr2 (1-58)||(7187412-7187469)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-73)||(72551-72623)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-111)||(25934-26043)
[»] chr1 (22 HSPs)
chr1 (4-115)||(50687442-50687552)
chr1 (1-98)||(14294735-14294832)
chr1 (1-110)||(21342927-21343036)
chr1 (1-110)||(21347792-21347901)
chr1 (1-98)||(51131404-51131501)
chr1 (1-115)||(27652399-27652512)
chr1 (132-211)||(40390003-40390082)
chr1 (1-114)||(16093028-16093141)
chr1 (1-115)||(16381965-16382080)
chr1 (1-115)||(43629304-43629416)
chr1 (1-115)||(50613246-50613360)
chr1 (1-115)||(50621074-50621188)
chr1 (166-212)||(12786220-12786267)
chr1 (1-98)||(15859324-15859420)
chr1 (1-115)||(48521342-48521456)
chr1 (1-59)||(21683883-21683941)
chr1 (4-58)||(52940037-52940091)
chr1 (1-58)||(13880545-13880602)
chr1 (1-58)||(20959017-20959074)
chr1 (1-60)||(22777347-22777407)
chr1 (107-139)||(27652515-27652547)
chr1 (107-139)||(50687407-50687439)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-115)||(2863-2976)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-98)||(254-351)
[»] scaffold0601 (1 HSPs)
scaffold0601 (1-104)||(7518-7620)
[»] scaffold0420 (1 HSPs)
scaffold0420 (1-115)||(5467-5581)
[»] scaffold0461 (1 HSPs)
scaffold0461 (132-211)||(12336-12416)
[»] scaffold0120 (1 HSPs)
scaffold0120 (132-211)||(29164-29243)
[»] scaffold1403 (1 HSPs)
scaffold1403 (1-115)||(1371-1484)
[»] scaffold0139 (1 HSPs)
scaffold0139 (1-115)||(39168-39282)
[»] scaffold0138 (1 HSPs)
scaffold0138 (1-115)||(17372-17486)
[»] scaffold1419 (1 HSPs)
scaffold1419 (8-115)||(887-994)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-115)||(22506-22619)
[»] scaffold0106 (1 HSPs)
scaffold0106 (1-104)||(18860-18963)
[»] scaffold0914 (1 HSPs)
scaffold0914 (1-60)||(2630-2689)
[»] scaffold0114 (1 HSPs)
scaffold0114 (1-60)||(46249-46308)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-115)||(84463-84575)
scaffold0001 (1-58)||(447401-447458)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-70)||(86435-86503)
scaffold0009 (169-211)||(160411-160453)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-115)||(62338-62450)
[»] scaffold0014 (3 HSPs)
scaffold0014 (1-55)||(79301-79356)
scaffold0014 (47-133)||(78904-78989)
scaffold0014 (1-60)||(203547-203607)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-60)||(333223-333282)
scaffold0004 (132-170)||(72978-73016)
scaffold0004 (134-166)||(110220-110252)
[»] scaffold0046 (2 HSPs)
scaffold0046 (1-98)||(25279-25377)
scaffold0046 (1-98)||(16092-16190)
[»] scaffold0145 (1 HSPs)
scaffold0145 (1-58)||(10725-10782)
[»] scaffold0169 (1 HSPs)
scaffold0169 (1-60)||(28703-28762)
[»] scaffold0347 (1 HSPs)
scaffold0347 (1-75)||(9772-9846)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-75)||(37290-37364)
[»] scaffold1835 (1 HSPs)
scaffold1835 (1-58)||(195-252)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-98)||(220341-220436)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-70)||(268545-268614)
[»] scaffold0357 (2 HSPs)
scaffold0357 (1-115)||(4796-4910)
scaffold0357 (107-139)||(4761-4793)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-60)||(13559-13618)
[»] scaffold0031 (1 HSPs)
scaffold0031 (132-166)||(127466-127500)
[»] scaffold0098 (2 HSPs)
scaffold0098 (53-110)||(29564-29621)
scaffold0098 (107-139)||(29524-29556)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-58)||(7197-7254)
[»] scaffold0007 (2 HSPs)
scaffold0007 (35-112)||(17149-17225)
scaffold0007 (3-56)||(163566-163619)
[»] scaffold0320 (1 HSPs)
scaffold0320 (1-69)||(12838-12906)
[»] scaffold0261 (2 HSPs)
scaffold0261 (53-105)||(17527-17579)
scaffold0261 (107-139)||(17592-17624)
[»] scaffold0180 (1 HSPs)
scaffold0180 (107-139)||(33793-33825)
[»] scaffold0162 (1 HSPs)
scaffold0162 (1-69)||(25482-25550)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 3851003 - 3851212
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3851003 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 3851102  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  3851103 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtaggtaaaccattgaattaacgtatgggggaagttttattcatcataa-ggttgtgta 3851201  T
Q  201 ctcatgtgggt 211  Q
    |||||||||||    
T  3851202 ctcatgtgggt 3851212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 16447761 - 16447905
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16447761 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 16447860  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  16447861 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 16447905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 19102469 - 19102611
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19102469 agggtgagactaacattcaatcttattaagtcagtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 19102568  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagt 143  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  19102569 gtgaggaattgatgaaaaattgttagatagatgtagaaagagt 19102611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21119813 - 21119957
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |    
T  21119813 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattaattttggaagatttgagaattagggttaaa 21119912  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  21119913 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 21119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 19024340 - 19024231
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||  ||||||||  ||||||||| ||||||||||||||||| ||||||||| || ||||| ||||| ||| |||||||||||||||||| |    
T  19024340 agggtgagacttgcattcaattctattaagtctgtaattctgatgattaagtttaacaagtgtaggattggttttagagaatttgagaattagggttaaa 19024241  T
Q  101 gtgaggaatt 110  Q
    ||||| ||||    
T  19024240 gtgagaaatt 19024231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23527307 - 23527405
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||| ||||| |||||||| || ||||| | |||||||||||||||| |||||||| |   | ||||||||||| ||||||||||||||||||||||    
T  23527307 agggtgggactagcattcaattttcttaagcctgtaattctgatgattagatttaacatgttataggattagtttttgaggatttgagaattagggtta 23527405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 19401016 - 19400947
Alignment:
Q  141 agtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||| ||| |||||||||||| ||| |||||  ||||||||||||||||||||||||||||| |||||||    
T  19401016 agtagctaattcattgaattaatgtaagggggt-gttttattcatcataagggttgtgtactcgtgtgggt 19400947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 19769093 - 19769139
Alignment:
Q  166 atggggggagttt-tattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  19769093 atggggggagtctctattcatcataagggttgtgtactcatgtgggt 19769139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 1818883 - 1818849
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    |||||||||||||||||| ||||||||||||||||    
T  1818883 tgttgaaagagtaggtaattcattgaattaacgta 1818849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14978550 - 14978607
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| | || |||||||| |||| ||||||||    
T  14978550 agggtgggactaacattcaatcttcttaagcctgtgattctgataattagatttaaca 14978607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25618907 - 25618964
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| | || |||||||| |||| ||||||||    
T  25618907 agggtgggactaacattcaatcttcttaagcctgtgattctgataattagatttaaca 25618964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 23077551 - 23077519
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  23077551 aattgatgaaaaattgttagattgatgtagaaa 23077519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 35011997 - 35011965
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  35011997 aattgatgaaaaattgttagattgatgtagaaa 35011965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3387511 - 3387364
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387511 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 3387412  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtaggta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387411 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtaggta 3387364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 10062890 - 10063034
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10062890 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 10062989  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  10062990 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 10063034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 48274546 - 48274402
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48274546 agggtgagactaacattcaatcttatcaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 48274447  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  48274446 gtgaggaattgatgaaaaattattagattgatgtagaaagagtag 48274402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9176842 - 9176956
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtt-ag 99  Q
    |||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||||||| ||    
T  9176842 agggtgagactagcattcaattttattaagtctgtaattctgataattaaatttaacaagtgtaggattagttttagagaatttgaggattagggttaag 9176941  T
Q  100 agtgaggaattgatga 115  Q
    ||||| ||||||||||    
T  9176942 agtga-gaattgatga 9176956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 16496338 - 16496241
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  16496338 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 16496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 1867245 - 1867353
Alignment:
Q  6 gagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagtgag 105  Q
    ||||||||||||||||||||||||||| |||||||||||  ||  |||||||||| || ||||||||||| ||  ||| |||||| | ||||| ||||||    
T  1867245 gagactaacattcaatcttattaagtctgtaattctgatagttgtatttaacaagtgtaggattagttttagacaattggagaatca-ggttaaagtgag 1867343  T
Q  106 gaattgatga 115  Q
    ||||||||||    
T  1867344 gaattgatga 1867353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14037162 - 14037049
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||| ||  |||||||||| || ||||||||||| ||  | | |||||||| ||||| |    
T  14037162 agggtgagactagcattcaattctattaagtctgtaattctgatggttgtatttaacaagtgtaggattagttttagaaaaatggagaatta-ggttaaa 14037064  T
Q  101 gtgaggaattgatga 115  Q
    |||||||||||||||    
T  14037063 gtgaggaattgatga 14037049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14347192 - 14347079
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||| ||  |||||||||| || ||||||||||| ||  | | |||||||| ||||| |    
T  14347192 agggtgagactagcattcaattctattaagtctgtaattctgatggttgtatttaacaagtgtaggattagttttagaaaaatggagaatta-ggttaaa 14347094  T
Q  101 gtgaggaattgatga 115  Q
    |||||||||||||||    
T  14347093 gtgaggaattgatga 14347079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 14045732 - 14045621
Alignment:
Q  3 ggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagt 102  Q
    |||||||||| ||||||||  ||||||||| |||||||||||| ||  | |||||||| || ||||||||||| ||  ||| |||||||| ||||| |||    
T  14045732 ggtgagactagcattcaattctattaagtctgtaattctgatggttgtacttaacaagtgtaggattagttttagaaaattggagaatta-ggttaaagt 14045634  T
Q  103 gaggaattgatga 115  Q
    |||||||||||||    
T  14045633 gaggaattgatga 14045621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 14355762 - 14355651
Alignment:
Q  3 ggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagt 102  Q
    |||||||||| ||||||||  ||||||||| |||||||||||| ||  | |||||||| || ||||||||||| ||  ||| |||||||| ||||| |||    
T  14355762 ggtgagactagcattcaattctattaagtctgtaattctgatggttgtacttaacaagtgtaggattagttttagaaaattggagaatta-ggttaaagt 14355664  T
Q  103 gaggaattgatga 115  Q
    |||||||||||||    
T  14355663 gaggaattgatga 14355651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16324914 - 16324802
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttg-gaggatttgagaattagggttag 99  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||||| ||| | || | || |||||||| |||||     
T  16324914 agggtgagactagcattcaatcttattaagtctgtacttctgatgatt-aatttaacaagtgtaggattaatttagagaag-ttggagaatta-ggttaa 16324818  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  16324817 agtgaggaattgatga 16324802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15117432 - 15117364
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatta 70  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||| || ||||||    
T  15117432 agggtgagactagcattcaatcttattaagtctgtacttctgatgatt-aatttaacaagtgtaggatta 15117364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15113906 - 15113848
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  15113906 agggtgagactagcattcaatcttattaagtctgtacttctgatgatt-aatttaacaag 15113848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 16250349 - 16250414
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagt-tttattcatcataagggttgt 197  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  16250349 tgttgaaagagtaggtaac-cattgaattaacgtaaggggggagtctctattcatcataagggttgt 16250414  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37793399 - 37793458
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  37793399 agggtgggactaacattcaatcttcttaagccgttaattctgatgattagatttaacaag 37793458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 3387340 - 3387306
Alignment:
Q  177 tttattcatcataagggttgtgtactcatgtgggt 211  Q
    |||||||||||||||||||||||||||||||||||    
T  3387340 tttattcatcataagggttgtgtactcatgtgggt 3387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11768097 - 11768171
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagtttt 75  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||| |||||||| | || || ||||||||    
T  11768097 agggtgggactaacattcaatcttcttaagcctataattctgatgattagatttaacatgtgtaggtttagtttt 11768171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 18147667 - 18147713
Alignment:
Q  166 atggggggagttt-tattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  18147667 atggggggagtctctattcatcataagggttgtgtactcatgtgggt 18147713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 11508775 - 11508816
Alignment:
Q  168 ggggggagttttattcatcataagggttgtgtactcatgtgg 209  Q
    ||||||||||||||||||  ||||||||||||| ||||||||    
T  11508775 ggggggagttttattcattgtaagggttgtgtaatcatgtgg 11508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16997137 - 16997080
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  16997137 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 16997080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17052769 - 17052826
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  ||||| ||||||||| ||||||||    
T  17052769 agggtgggactaacattcaatcttcttaagccgataattttgatgattagatttaaca 17052826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42462916 - 42462859
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  42462916 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 42462859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 8930888 - 8930920
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacg 164  Q
    ||||||||||||||||||| |||||||||||||    
T  8930888 tgttgaaagagtaggtaaaccattgaattaacg 8930920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 15700855 - 15700895
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggg 172  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  15700855 tgttgaaagagtaggtaaactattgaattaacgtaaggggg 15700895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26222338 - 26222482
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26222338 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 26222437  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  26222438 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 26222482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26220615 - 26220471
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26220615 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 26220516  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  26220515 gtgagaaattgatgaaaaattgttagattgatgtagaaagagtag 26220471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 40492035 - 40492149
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtt-ag 99  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| || |||||| |||| ||| ||||||||||||||||| ||    
T  40492035 agggtgagactagcattcaatcttattaagtctgtaattttgatgattaaatttaacaagtgtaggattaattttagagaatttgagaattagggttaag 40492134  T
Q  100 agtgaggaattgatga 115  Q
    ||||| ||||||||||    
T  40492135 agtga-gaattgatga 40492149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 24354009 - 24353896
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||  | |||||||| ||| |||||||||||| |||||      
T  24354009 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtatggttagttttagagaatttgagaatta-ggttaag 24353911  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  24353910 gtgagaaattgatga 24353896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22365599 - 22365508
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaatta 92  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||  |||| ||| ||||||||||||    
T  22365599 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtaggattgattttagagaatttgagaatta 22365508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13507239 - 13507298
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13507239 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaag 13507298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13596771 - 13596830
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13596771 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaag 13596830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17266151 - 17266264
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||  |||||||||| || ||||| ||||| ||| | |||  ||||||||||| |    
T  17266151 agggtgagactaacattcaatcttattaaatctgtaattctgatggttgtatttaacaagtgtaggatt-gttttagagaagttggaaattagggttaaa 17266249  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  17266250 gtgagaaattgatga 17266264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14102359 - 14102471
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttg-gaggatttgagaattagggttag 99  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||| ||| | || | || |||||||| |||||     
T  14102359 agggtgagactagcattcaatcttattaagtctgtaattctgatgatt-aatttaacaagtgtaggattaatttagcgaag-ttggagaatta-ggttaa 14102455  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  14102456 agtgaggaattgatga 14102471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 21697580 - 21697659
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||| ||||||||||||||| | |  |||||| |||||||||||||||||||||| | |||||||    
T  21697580 tgttgaaagagtaggtaaaccattgaattaacgtaagtgaagagtttcattcatcataagggttgtgtacgcgtgtgggt 21697659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 22966742 - 22966690
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattca 184  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  22966742 tgttgaaagagtaggtaaatcattgaattaacgtaagtggggagttttattca 22966690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2418010 - 2418122
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtt-ag 99  Q
    |||||||||||| |||||||| || ||| |   |||||||||||||||| |||||| ||| || ||||||| ||||||| ||||||||||||||||| ||    
T  2418010 agggtgagactagcattcaattttcttatgat-gtaattctgatgattagatttaaaaagtgtaggattag-tttggagaatttgagaattagggttaag 2418107  T
Q  100 agtgaggaattgatga 115  Q
    ||||| ||||||||||    
T  2418108 agtga-gaattgatga 2418122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19936247 - 19936343
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagg-gtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||  ||||||| |  || || |||||||| ||| ||||||||||||||||||    
T  19936247 agggtgagactagcattcaattctattaagtctgtaattctgatgatta--tttaacatgttgtaggtttagtttttgagaatttgagaattagggtta 19936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22984607 - 22984532
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttg 76  Q
    |||||||||||||||||||||||| ||||| |  | ||||||||||||| |||||||| | || || |||||||||    
T  22984607 agggtgagactaacattcaatcttcttaagcctttgattctgatgattagatttaacatgtgtaggtttagttttg 22984532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39834598 - 39834559
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattc 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  39834598 agggtgagactaacattcaatcttattaagtctgtaattc 39834559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 23884100 - 23884066
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    |||||||||||||||||||||||||||||||||||    
T  23884100 tgttgaaagagtaggtaaatcattgaattaacgta 23884066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17085077 - 17085136
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||| ||||||||||||||||| ||||| |  ||||| ||||||||| ||||||||||    
T  17085077 agggtgggactaacattcaatcttcttaagcctttaattatgatgattagatttaacaag 17085136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17085311 - 17085370
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||| ||||||||||||||||| ||||| |  ||||| ||||||||| ||||||||||    
T  17085311 agggtgggactaacattcaatcttcttaagcctttaattatgatgattagatttaacaag 17085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28398533 - 28398436
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggtta 98  Q
    ||||||||||||||||||||| || ||||| |  | ||||||||||||| | |||||| |  || |||||||||||||| || |||| |||||||||||    
T  28398533 agggtgagactaacattcaattttcttaagcctatgattctgatgattagaattaacatgttgtaggattagttttgga-gaattgaaaattagggtta 28398436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 36305935 - 36305901
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    ||||||||||||||||||| |||||||||||||||    
T  36305935 tgttgaaagagtaggtaaaccattgaattaacgta 36305901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 36732605 - 36732639
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    ||||||||||||||||||| |||||||||||||||    
T  36732605 tgttgaaagagtaggtaaaccattgaattaacgta 36732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20501237 - 20501294
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  20501237 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 20501294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20532543 - 20532600
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||  |||||||    ||||||||||||||| ||||||||    
T  20532543 agggtgagactaacattcaattctattaagctgataattctgatgattagatttaaca 20532600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22996756 - 22996699
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||||| ||||| |  | ||| ||||||||| ||||||||    
T  22996756 agggtgagactaacattcaatcttcttaagcctatgattttgatgattagatttaaca 22996699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 17438788 - 17438820
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  17438788 aattgatgaaaaattgttagattgatgtagaaa 17438820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 19154136 - 19154168
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  19154136 aattgatgaaaaattgttagattgatgtagaaa 19154168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 22365483 - 22365451
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  22365483 aattgatgaaaaattgttagattgatgtagaaa 22365451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 24353893 - 24353861
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  24353893 aattgatgaaaaattgttagattgatgtagaaa 24353861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18318191 - 18318335
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18318191 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 18318290  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  18318291 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 18318335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 20765237 - 20765380
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20765237 agggtgagactaaaattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 20765336  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  20765337 gtgaggaa-tgatgaaaaattgttagattgatgtagaaagagtag 20765380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 36315489 - 36315392
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  36315489 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 36315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 22177354 - 22177467
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||  ||| ||| | |||  ||||||| ||| |    
T  22177354 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtaggatta-atttagagaagttggaaattaggtttaaa 22177452  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  22177453 gtgagaaattgatga 22177467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 24068161 - 24068082
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    |||||||| |||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||| | |||||||    
T  24068161 tgttgaaaaagtaggtaaaccattgaattaacgtaagtggggagtttcattcatcataagggttgtgtacgcgtgtgggt 24068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27988112 - 27988181
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatta 70  Q
    |||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||| || ||||||    
T  27988112 agggtgagactaacattcaattctattaagtctgtaattctgatggttaaatttaacaagtgtaggatta 27988181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26731991 - 26732050
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  26731991 agggtgagactaacattcaattctcttaagtctgtaattctgatgattaaatttaacaag 26732050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26739804 - 26739863
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  26739804 agggtgagactaacattcaattctcttaagtctgtaattctgatgattaaatttaacaag 26739863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 21327433 - 21327485
Alignment:
Q  4 gtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaa 56  Q
    |||||||||||||||||| || |||||||  ||||||||||||||| ||||||    
T  21327433 gtgagactaacattcaattttcttaagtctataattctgatgattagatttaa 21327485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 39176458 - 39176426
Alignment:
Q  179 tattcatcataagggttgtgtactcatgtgggt 211  Q
    |||||||||||||||||||||||||||||||||    
T  39176458 tattcatcataagggttgtgtactcatgtgggt 39176426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 1627039 - 1627073
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    ||||||||||||||||||| |||||||||||||||    
T  1627039 tgttgaaagagtaggtaaaccattgaattaacgta 1627073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 54797893 - 54798037
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  54797893 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 54797992  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  54797993 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 54798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14281313 - 14281169
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  14281313 agggtgagactaacattcaatcttattaagtatgtaattctgatgattaaatttaacaagggtgggattggttttggaggatttgagaattagggttaaa 14281214  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||    
T  14281213 gtgaagaatttatgaaaaattgttagattgatgtagaaagagtag 14281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 15239937 - 15240013
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtg 208  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15239937 tgttgaaaaagtaggtaaaccattgaattaacgtaaggggggagttttattcatcataagggttgtgtgctcatgtg 15240013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 3838062 - 3837983
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||| | |||||||    
T  3838062 tgttgaaagagtaggtaaaccattgaattaacgtaagtggggagtttcattcatcataagggttgtgtacgcgtgtgggt 3837983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 53081310 - 53081423
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||  ||| ||| | |||  ||||||||||| |    
T  53081310 agggtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtatgatta-atttagagaagttggaaattagggttaaa 53081408  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  53081409 gtgagaaattgatga 53081423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 20150757 - 20150678
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||| ||||||||||||||| | || |||||| |||||||||||||||||||||| | |||||||    
T  20150757 tgttgaaagagtaggtaaaccattgaattaacgtaagtggagagtttcattcatcataagggttgtgtacgcgtgtgggt 20150678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26790300 - 26790190
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||||||||||| || |||||||  | ||| ||||||||| |||||||| | || || |||||||| ||| |||||| ||||||| | | |    
T  26790300 agggtgagactaacattcaattttcttaagtctatgattttgatgattagatttaacatgtgtaggtttagtttttgagaatttga-aattaggttaaaa 26790202  T
Q  101 gtgaggaattga 112  Q
    ||||| ||||||    
T  26790201 gtgagcaattga 26790190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 11153830 - 11153798
Alignment:
Q  179 tattcatcataagggttgtgtactcatgtgggt 211  Q
    |||||||||||||||||||||||||||||||||    
T  11153830 tattcatcataagggttgtgtactcatgtgggt 11153798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 14852038 - 14852090
Alignment:
Q  8 gactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    ||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  14852038 gactaacattcaatcttcttaagcctttaattctgatgattagatttaacaag 14852090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 12841609 - 12841495
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggttag 99  Q
    |||||| ||||||||||||||||| ||||| || | |||||||| |||| |||||||| |  |  || |||||||| ||| ||| |||||||||| | |     
T  12841609 agggtgggactaacattcaatcttcttaagcccatgattctgataattagatttaacatgttggaggtttagtttt-gagaattggagaattaggttaaa 12841511  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  12841510 agtgaggaattgatga 12841495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12611954 - 12611897
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||||| ||||| |  | |||||||| |||| ||||||||    
T  12611954 agggtgagactaacattcaatcttcttaagcctatgattctgataattagatttaaca 12611897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 15867929 - 15867986
Alignment:
Q  53 ttaacaagggtgggattagttttggaggatttgagaattagggttagagtgaggaatt 110  Q
    |||||||| || |||||  |||| ||| |||||||||||||||||| |||||||||||    
T  15867929 ttaacaagtgttggattgattttagagaatttgagaattagggttaaagtgaggaatt 15867986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 16043938 - 16043905
Alignment:
Q  65 ggattagttttggaggatttgagaattagggtta 98  Q
    ||||||||||| ||||||||||||||||||||||    
T  16043938 ggattagtttttgaggatttgagaattagggtta 16043905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23802413 - 23802470
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||||| ||||| |  | |||||||| |||| ||||||||    
T  23802413 agggtgagactaacattcaatcttcttaagcctatgattctgataattagatttaaca 23802470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 15867994 - 15868026
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  15867994 aattgatgaaaaattgttagattgatgtagaaa 15868026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 23974153 - 23974109
Alignment:
Q  166 atggggggagtttt-attcatcataagggttgtgtactcatgtgg 209  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||    
T  23974153 atggggggagtttttattcatcataagggctgtgtattcatgtgg 23974109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 32852246 - 32852214
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  32852246 aattgatgaaaaattgttagattgatgtagaaa 32852214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 117493 - 117349
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  117493 agggtgagactaacattcaatcttattaagtctgtaattatgatgattaaatttaagaagggtgggattagttttggaggatttgagaattagggttaaa 117394  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  117393 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 117349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 128105 - 128219
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtt-ag 99  Q
    ||||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||| ||| ||    
T  128105 agggtgagattagcattcaatcttattaagtttgtaattctgatgattaaatttaacaagtgtaggattagttttagagaatttgagaattagagttaag 128204  T
Q  100 agtgaggaattgatga 115  Q
    ||||| ||||||||||    
T  128205 agtga-gaattgatga 128219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21619445 - 21619301
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |    
T  21619445 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgagattaattttggaggatttgagaattagggttaaa 21619346  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  21619345 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 21619301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 36167594 - 36167450
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  36167594 agggtgagactaacattcaatcttattaagtctgtaatcctgatgattaaatttaacaagggtgggattaattttggaggatttgagaattagggttaaa 36167495  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  36167494 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 36167450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 10551367 - 10551223
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10551367 agggtgagattaacattcaatcttattaagtctgtaatttcgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaaa 10551268  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    ||| ||||||||| |||||||||||||||||||| ||||||||||    
T  10551267 gtgcggaattgattaaaaattgttagattgatgtagaaagagtag 10551223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 43928051 - 43927913
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggttag 99  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||  ||||||||||  || ||||||||| | ||| |||||||||||| |||||     
T  43928051 agggtgagactagcattcaatcttattaagtctgtaattctgatggttgtatttaacaagttgtaggattagttattgagaatttgagaatta-ggttaa 43927953  T
Q  100 agtgaggaattgatgaaaaattgttagattgatgttgaaa 139  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  43927952 agtgaggaattgatgaaaaattgttagattgatgtagaaa 43927913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28195575 - 28195478
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  28195575 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 28195478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10557772 - 10557663
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||| | ||||||||  ||||||||| ||||||||||||||||||||||||||  || ||||| ||||| ||| |||||||||||||||||  |    
T  10557772 agggtgagaccagcattcaattctattaagtctgtaattctgatgattaaatttaacaactgtaggattggttttagagaatttgagaattagggttcaa 10557673  T
Q  101 gtgaggaatt 110  Q
    ||||| ||||    
T  10557672 gtgagaaatt 10557663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 21838418 - 21838308
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  |||| |||| ||||||||||||||||||||||||||| || | |||| |||| |||  || |||||||| ||||| |    
T  21838418 agggtgagactagcattcaattatattgagtctgtaattctgatgattaaatttaacaagtgtagaattaattttagagagttggagaatta-ggttaaa 21838320  T
Q  101 gtgaggaattga 112  Q
    ||||||||||||    
T  21838319 gtgaggaattga 21838308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45219419 - 45219531
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttt-tggaggatttgagaattagggttag 99  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||| |||  ||| | || |||||||| |||||     
T  45219419 agggtgagactagcattcaatcttattaagtctgtaattctgatgatt-aatttaacaagagtaggattaatttaaggaag-ttggagaatta-ggttaa 45219515  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  45219516 agtgaggaattgatga 45219531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23275609 - 23275541
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatt 69  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || |||||    
T  23275609 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggatt 23275541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17738225 - 17738142
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggattt 84  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||| ||| || ||||| ||||| ||| ||||    
T  17738225 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaataagtgtaggattggttttagagaattt 17738142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 19039545 - 19039454
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaatta 92  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||||||| |||||||||| || ||||  ||||| ||| ||||| ||||||    
T  19039545 agggtgagactagcattcaattctattaagtctgtaattctgatgattagatttaacaagtgtaggatgggttttagagaatttgggaatta 19039454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 49968989 - 49969058
Alignment:
Q  141 agtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||| ||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  49968989 agtagctaattcattgaattaatgtaagggggg-gttttattcatcataagggttgtgtactcgtgtgggt 49969058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 15777405 - 15777447
Alignment:
Q  169 gggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  15777405 gggggagttttattcatcataagggttgtgtacttatgtgggt 15777447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22109488 - 22109598
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||| | ||||  ||||||||| |||||||||||  ||  |||| ||||| || ||||||  |||| || | |||||||||||||||| |    
T  22109488 agggtgagactaacttacaattatattaagtctgtaattctgatagttgtatttgacaagtgtaggatta-atttgaagaaattgagaattagggttaaa 22109586  T
Q  101 gtgaggaattga 112  Q
    | ||||||||||    
T  22109587 gagaggaattga 22109598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9578590 - 9578533
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  9578590 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 9578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 9733690 - 9733727
Alignment:
Q  172 ggagttttattcatcataagggttgtgtactcatgtgg 209  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  9733690 ggagttttattcattgtaagggttgtgtactcatgtgg 9733727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11202266 - 11202209
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||| ||||||||||| |||||||  | |||||||| |||| ||||||||    
T  11202266 agggtgagactagcattcaatcttcttaagtctatgattctgataattagatttaaca 11202209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14502111 - 14502002
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||  |||||| || |||||||    | ||  |  ||||||| || ||||| ||||| ||| |||||||||||||||||| |    
T  14502111 agggtgagactaacattcaattctattaattctgtaattcaatcggttgtaaataacaagtgtaggattggttttagagaatttgagaattagggttaaa 14502012  T
Q  101 gtgaggaatt 110  Q
    ||||| ||||    
T  14502011 gtgagaaatt 14502002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50243856 - 50243799
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||||| ||||| | || ||||| || |||| ||||||||    
T  50243856 agggtgagactaacattcaatcttcttaagcctgtgattctcataattagatttaaca 50243799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 14501994 - 14501962
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  14501994 aattgatgaaaaattgttagattgatgtagaaa 14501962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 24177890 - 24177930
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggg 172  Q
    ||||||||||||||| ||| ||||||||||||||| |||||    
T  24177890 tgttgaaagagtaggcaaaccattgaattaacgtaaggggg 24177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 53300835 - 53300879
Alignment:
Q  4 gtgagactaacattcaatcttattaagtccgtaattctgatgatt 48  Q
    ||||||||| ||||||||  ||||||||| |||||||||||||||    
T  53300835 gtgagactagcattcaattctattaagtctgtaattctgatgatt 53300879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 43138321 - 43138177
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |    
T  43138321 agggtgagactaacattcaatcttattaggtctgtaattctgatgattaaatttaacaagggtgggattagttttgaaggatttgataattagggttaaa 43138222  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  43138221 gtgaggaattgatgaaaaattgttagattgatgtagaaagagtag 43138177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 24941645 - 24941501
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  24941645 agggtgagacaaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaatttgggttaaa 24941546  T
Q  101 gtgaggaattgatgaaaaattgttagattgatgttgaaagagtag 145  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||    
T  24941545 gtgaggaattgatgaaaaattcgtagattgatgtagaaagagtag 24941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 23005715 - 23005602
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  ||||||||| |||||| |||||||||||||||| ||| || ||||||||||| ||| |||||||||||| ||||| |    
T  23005715 agggtgagactagcattcaattctattaagtctgtaattttgatgattaaatttaagaagtgtaggattagttttagagaatttgagaatta-ggttaaa 23005617  T
Q  101 gtgaggaattgatga 115  Q
    | ||| |||||||||    
T  23005616 gggagaaattgatga 23005602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 25109833 - 25109720
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || | ||||||||| ||| ||| |||||||| ||| | |    
T  25109833 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtagaattagttttagagaattggagaatta-ggtaaaa 25109735  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  25109734 gtgagaaattgatga 25109720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 23792239 - 23792126
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||  |||||  ||| ||| | |||  ||||||||||| |    
T  23792239 agggtgagcctagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtatgatta-atttagagaagttggaaattagggttaaa 23792141  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  23792140 gtgagaaattgatga 23792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22458697 - 22458765
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatta 70  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  22458697 agggtgagactagcattcaattttattaagtctgtaattctgatgatt-aatttaacaagtgtgggatta 22458765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19672813 - 19672754
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||    
T  19672813 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaag 19672754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26393367 - 26393308
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||||    
T  26393367 agggtgagactaacattcaattctcttaagtctgtaattctgatgattaaatttaacaag 26393308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27845602 - 27845505
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggtta 98  Q
    ||||||||||||||||||||| || |||||||  ||||||||||||||| ||||||||||  || ||||||||||| ||| ||| || |||||||||||    
T  27845602 agggtgagactaacattcaattttcttaagtctataattctgatgattagatttaacaagttgtaggattagtttttgagaattgga-aattagggtta 27845505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 34491365 - 34491444
Alignment:
Q  132 tgttgaaagagtaggtaaatc-attgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    |||| |||||||| ||||||| |||||||||||||| ||| | |||||||||||||||||| |||  ||||||||||||||    
T  34491365 tgttaaaagagtaagtaaatccattgaattaacgtaagggag-agttttattcatcataagagttacgtactcatgtgggt 34491444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18546150 - 18546209
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||| |||||| || |||||||  ||||||||||||||| ||||| ||||    
T  18546150 agggtgagactaacgttcaattttcttaagtctataattctgatgattagatttagcaag 18546209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7187469 - 7187412
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||||||||||||||||||||| ||||| |  | |||||||| |||| ||||||||    
T  7187469 agggtgagactaacattcaatcttcttaagcctatgattctgataattagatttaaca 7187412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 72623 - 72551
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagtt 73  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  72623 agggtgagactaacattcaatcttattaagtctgtaattctgatgattaaatttaacaagggtgggattagtt 72551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26043 - 25934
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||| ||||| |    
T  26043 agggtgagactagcattcaatcttattaagcctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaatta-ggttaaa 25945  T
Q  101 gtgaggaattg 111  Q
    |||||||||||    
T  25944 gtgaggaattg 25934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 50687552 - 50687442
Alignment:
Q  4 gtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagtg 103  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||| ||||| || |    
T  50687552 gtgagactagcattcaatcttattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaatta-ggttaaaggg 50687454  T
Q  104 aggaattgatga 115  Q
    || |||||||||    
T  50687453 agaaattgatga 50687442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 14294735 - 14294832
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  14294735 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 14294832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21343036 - 21342927
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||||||||| |    
T  21343036 agggtgggactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggttaaa 21342937  T
Q  101 gtgaggaatt 110  Q
    ||||| ||||    
T  21342936 gtgagaaatt 21342927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 21347901 - 21347792
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||||||||| |    
T  21347901 agggtgggactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggttaaa 21347802  T
Q  101 gtgaggaatt 110  Q
    ||||| ||||    
T  21347801 gtgagaaatt 21347792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 51131501 - 51131404
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  51131501 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 51131404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27652399 - 27652512
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || | ||||||||| ||| ||| ||||||||  |||| |    
T  27652399 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtagaattagttttagagaattggagaatta-agttaaa 27652497  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  27652498 gtgagaaattgatga 27652512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40390082 - 40390003
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||| ||||||||||||||| | || |||||| |||||||||||||||||||||| | |||||||    
T  40390082 tgttgaaagagtaggtaaaccattgaattaacgtaagtggagagtttcattcatcataagggttgtgtacgcgtgtgggt 40390003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16093028 - 16093141
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    ||||||||||||||||||||| ||||||||||  | ||||  || |||||||||||| || || |||||  |||| ||| |||||||||||||||||| |    
T  16093028 agggtgagactaacattcaattttattaagtctatgattcatataattaaatttaaccagtgtaggattgattttagagaatttgagaattagggttaaa 16093127  T
Q  101 gtgaggaattgatg 114  Q
    ||||| ||||||||    
T  16093128 gtgagaaattgatg 16093141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16382080 - 16381965
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagg-gtgggattagttttggaggatttgagaattagggttag 99  Q
    |||||| ||||| ||||||||  ||||||||| |||||||  ||| ||  |||||||| |  || ||||||||||| ||||||||||||||||||||||     
T  16382080 agggtgggactagcattcaattctattaagtctgtaattcatatggttgtatttaacatgttgtaggattagtttttgaggatttgagaattagggttaa 16381981  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  16381980 agtgaggaattgatga 16381965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 43629304 - 43629416
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttt-tggaggatttgagaattagggttag 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| || |||||| |||  ||| | || |||||||| |||||     
T  43629304 agggtgagactaacattcaatcttattaagtctgtaattctgatgatt-aatttaataagagtaggattaatttaaggaag-ttggagaatta-ggttaa 43629400  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  43629401 agtgaggaattgatga 43629416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 50613246 - 50613360
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||  ||  |||||||||| || ||||| ||||| ||  | |||||||||||||||| |    
T  50613246 agggtgagactaacattcaatcctattaagtctgtaattatgattgttgtatttaacaagtgtaggatttgttttagaaaagttgagaattagggttaaa 50613345  T
Q  101 gtgaggaattgatga 115  Q
    ||||  |||||||||    
T  50613346 gtgataaattgatga 50613360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 50621074 - 50621188
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||  ||  |||||||||| || ||||| ||||| ||  | |||||||||||||||| |    
T  50621074 agggtgagactaacattcaatcctattaagtctgtaattatgattgttgtatttaacaagtgtaggatttgttttagaaaagttgagaattagggttaaa 50621173  T
Q  101 gtgaggaattgatga 115  Q
    ||||  |||||||||    
T  50621174 gtgataaattgatga 50621188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 12786267 - 12786220
Alignment:
Q  166 atggggggagttt-tattcatcataagggttgtgtactcatgtgggtg 212  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  12786267 atggggggagtctctattcatcataagggttgtgtactcatgtgggtg 12786220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15859324 - 15859420
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagg-gtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| |||| |||  ||||||||| ||||||||||||||||  ||||||| |  || || |||||||| ||| ||||||||||||||||||    
T  15859324 agggtgagactagcatttaattctattaagtctgtaattctgatgatta--tttaacatgttgtaggtttagtttttgagaatttgagaattagggtta 15859420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 48521456 - 48521342
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggttag 99  Q
    |||||| ||||||||||||||||| ||||| | || |||||||| |||| |||||||| |  |  || |||||||| ||| ||| |||||||||| | ||    
T  48521456 agggtgggactaacattcaatcttcttaagcctgtgattctgataattagatttaacatgttggaggtttagtttt-gagaattggagaattaggttaag 48521358  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  48521357 agtgaggaattgatga 48521342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 21683941 - 21683883
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaa 59  Q
    ||||||||||||||||||||| || |||||||  ||||||||||| ||| |||||||||    
T  21683941 agggtgagactaacattcaattttcttaagtctataattctgatggttagatttaacaa 21683883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 52940037 - 52940091
Alignment:
Q  4 gtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    ||||||||||||||||||||| ||||| |  ||||||||||||||| ||||||||    
T  52940037 gtgagactaacattcaatcttcttaagcctttaattctgatgattagatttaaca 52940091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 13880545 - 13880602
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| | || |||||||| |||| ||||||||    
T  13880545 agggtgggactaacattcaatcttcttaagcctgtgattctgataattagatttaaca 13880602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20959074 - 20959017
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  20959074 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 20959017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22777407 - 22777347
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccg-taattctgatgattaaatttaacaag 60  Q
    ||||||||||||||||||||| || ||||| |   ||||||||||||||| ||||||||||    
T  22777407 agggtgagactaacattcaattttcttaagccttataattctgatgattagatttaacaag 22777347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 27652515 - 27652547
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  27652515 aattgatgaaaaattgttagattgatgtagaaa 27652547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 50687439 - 50687407
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  50687439 aattgatgaaaaattgttagattgatgtagaaa 50687407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2976 - 2863
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||| ||  |||||||| ||| ||||| |    
T  2976 agggtgagactagcattcaatcttattaagtctttaattctgatgattaaatttaacaagtgtaggattagttttagataatttgagagtta-ggttaaa 2878  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  2877 gtgagaaattgatga 2863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 254 - 351
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||||||    
T  254 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggattggttttagagaatttgagaattagggtta 351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7620 - 7518
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| || ||||| | ||| ||| |||||||||||||||||| |    
T  7620 agggtgagactaacattcaattctattaagtctgtaattctgatgattaaatttaacaagtgtaggatt-ggtttagagaatttgagaattagggttata 7522  T
Q  101 gtga 104  Q
    ||||    
T  7521 gtga 7518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 5467 - 5581
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||| || ||||||||||| ||| | |||  || |||||||| |    
T  5467 agggtgagactaacattcaatcttattaagtctgtaattctgatggttgtatttaacaagtgtaggattagttttagagaagttggaaactagggttaaa 5566  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  5567 gtgagaaattgatga 5581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 12416 - 12336
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatgg-ggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||    
T  12416 tgttgaaagagtaggtaaatcattgaattaacgtaaggaggggagttttattcatcgtaagggatatgtactcatgtgggt 12336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 29243 - 29164
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | ||||||||||||| ||||||||||    
T  29243 tgttgaaagagtaggtaaaccattgaattaacgtaagtggggagttttattcagcgtaagggttgtgtaatcatgtgggt 29164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1403 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold1403
Description:

Target: scaffold1403; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1484 - 1371
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||| || ||||||| ||| ||| | |||  ||||||||||| |    
T  1484 agggtgagactagcattcaatcttattaagtctataattctgatgattgaatttaacaagtgtaggattag-tttagagaagttggaaattagggttaaa 1386  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  1385 gtgagaaattgatga 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 39282 - 39168
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||| ||  |||||||||| || ||||| ||||| ||  | |||||||||||||||| |    
T  39282 agggtgagactagcattcaatcttattaagtctgtaattctaatggttgtatttaacaagtgtaggatttgttttagaaaagttgagaattagggttaaa 39183  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  39182 gtgagaaattgatga 39168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17372 - 17486
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||| || ||||||||||| | | | |||  || |||||||| |    
T  17372 agggtgagactaacattcaatcttattaagtctgtaattctgatggttgtatttaacaagtgtaggattagttttagtgaagttggaaactagggttaaa 17471  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  17472 gtgagaaattgatga 17486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1419 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 994 - 887
Alignment:
Q  8 gactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagtgagga 107  Q
    ||||| |||||||| || |||||||  ||||| ||||||||| |||||||| | || || |||||||| |||||||||||||||||||||| ||||| ||    
T  994 gactagcattcaattttcttaagtctataattatgatgattagatttaacatgtgtaggtttagtttttgaggatttgagaattagggttaaagtgaaga 895  T
Q  108 attgatga 115  Q
    ||||||||    
T  894 attgatga 887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 22506 - 22619
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttaga 100  Q
    |||||||||||| ||| ||||| ||||||||| |||||||||||| ||  |||||||||| || || |||||||| ||| |||||||||||| ||||| |    
T  22506 agggtgagactagcatgcaatcctattaagtctgtaattctgatggttttatttaacaagtgtagggttagttttagagaatttgagaatta-ggttaaa 22604  T
Q  101 gtgaggaattgatga 115  Q
    ||||| |||||||||    
T  22605 gtgagaaattgatga 22619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 18860 - 18963
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggttag 99  Q
    ||||||||||||||||||||| || |||||||  ||||||||||||||| ||||||||||  || ||||||||||| ||| ||| || |||||||||||     
T  18860 agggtgagactaacattcaattttcttaagtctataattctgatgattagatttaacaagttgtaggattagtttttgagaattgga-aattagggttaa 18958  T
Q  100 agtga 104  Q
    |||||    
T  18959 agtga 18963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2689 - 2630
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  2689 agggtgagactaacattcaatcttcttaagtctataattctgatgattagatttaacaag 2630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46249 - 46308
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||    
T  46249 agggtgagactagcattcaattctattaagtctgtaattctgatgattaaatttaacaag 46308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 84463 - 84575
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttt-tggaggatttgagaattagggttag 99  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||| || |||||| |||  ||| | || |||||||| |||||     
T  84463 agggtgagactagcattcaatcttattaagtctgtaattctgatgatt-actttaacaagagtaggattaatttaaggaag-ttggagaatta-ggttaa 84559  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  84560 agtgaggaattgatga 84575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 447458 - 447401
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  447458 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaaca 447401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 86503 - 86435
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatta 70  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||| || ||||||    
T  86503 agggtgagactagcattcaatcctattaagtctgtaattctgatgatt-aatttaacaagtgtaggatta 86435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 160453 - 160411
Alignment:
Q  169 gggggagttttattcatcataagggttgtgtactcatgtgggt 211  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  160453 gggggagttttattcatcataagggttgtttactcatgtgggt 160411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 62338 - 62450
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttg-gaggatttgagaattagggttag 99  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||  || |||||| ||| | || | || |||||||| |||||     
T  62338 agggtgagactagcattcaatcttaataagtctgtaattctgatgatt-aatttaacaaatgtaggattaatttagagaag-ttggagaatta-ggttaa 62434  T
Q  100 agtgaggaattgatga 115  Q
    ||||||||||||||||    
T  62435 agtgaggaattgatga 62450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 79356 - 79301
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgt-aattctgatgattaaattta 55  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  79356 agggtgagactaacattcaatcttattaagtctgtaaattctaatgattaaattta 79301  T

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Target: scaffold0014; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 78989 - 78904
Alignment:
Q  47 ttaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagtgaggaattgatgaaaaattgttagattgatg 133  Q
    |||||||||| ||| || ||||| ||||| |||||||||| ||||||| ||| |||||  ||||||||||||||||||| |||||||    
T  78989 ttaaatttaataagtgtaggattggttttagaggatttgaaaattagg-ttaaagtgattaattgatgaaaaattgttatattgatg 78904  T

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Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 203547 - 203607
Alignment:
Q  1 agggtgagactaacattcaatcttattaag-tccgtaattctgatgattaaatttaacaag 60  Q
    |||||||||||||||||||||||| ||||| |   ||||||||||| ||| ||||||||||    
T  203547 agggtgagactaacattcaatcttcttaagctttataattctgatggttagatttaacaag 203607  T

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Target: scaffold0004 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 333282 - 333223
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    ||||||||||||||||||||| || |||||||  ||||||||||||||| ||||||||||    
T  333282 agggtgagactaacattcaattttcttaagtctataattctgatgattagatttaacaag 333223  T

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Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 73016 - 72978
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgtatggg 170  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  73016 tgttgaaagagtaggtaagccattgaattaacgtatggg 72978  T

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Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 110252 - 110220
Alignment:
Q  134 ttgaaagagtaggtaaatcattgaattaacgta 166  Q
    ||||||||||||||||| |||||||||||||||    
T  110252 ttgaaagagtaggtaaaccattgaattaacgta 110220  T

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Target: scaffold0046 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25279 - 25377
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggtta 98  Q
    ||||||||||||||||||||| || |||||||  ||||||||||||||| ||||| ||||  || ||||||||||| ||   || ||||||||||||||    
T  25279 agggtgagactaacattcaattttcttaagtcgataattctgatgattagatttagcaagttgtaggattagtttttgaaagttggagaattagggtta 25377  T

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Target: scaffold0046; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 16092 - 16190
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag-ggtgggattagttttggaggatttgagaattagggtta 98  Q
    ||||||||||||||||||||| || |||||||  |||||| |||||||| ||||| ||||  || ||||||||||| ||   || ||||||||||||||    
T  16092 agggtgagactaacattcaattttcttaagtctataattcggatgattagatttagcaagttgtaggattagtttttgaaagttggagaattagggtta 16190  T

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Target: scaffold0145 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10782 - 10725
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||||||||||||    
T  10782 agggtgggactaacattcaatcttcttaagccgttaattctgatgattaaatttaaca 10725  T

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Target: scaffold0169 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28703 - 28762
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  28703 agggtgggactaacattcaatcttcttaagcctttaattctgatgattagatttaacaag 28762  T

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Target: scaffold0347 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9846 - 9772
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagtttt 75  Q
    |||||||||||||||||||||||| ||||| |  | ||||||||||||| |||||||| | || || ||||||||    
T  9846 agggtgagactaacattcaatcttcttaagcctatgattctgatgattagatttaacatgtgtaggtttagtttt 9772  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37290 - 37364
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagtttt 75  Q
    |||||||||||||||||||||||| ||||| |  | ||||||||||||| |||||||| | || || ||||||||    
T  37290 agggtgagactaacattcaatcttcttaagcctatgattctgatgattagatttaacatgtgtaggtttagtttt 37364  T

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Target: scaffold1835 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1835
Description:

Target: scaffold1835; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 252 - 195
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||||||    
T  252 agggtgcgactaacattcaatcttcttaagcctttaattctgatgattagatttaaca 195  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 220341 - 220436
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggtta 98  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||| | ||| || |||||||| ||| |||||| |||||||||||    
T  220341 agggtgggactaacattcaatcttcttaagcctatgattctgatgattagatttaac-atggtaggtttagtttttgagaatttga-aattagggtta 220436  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 268614 - 268545
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatta 70  Q
    ||||||||||||  |||||||  ||||||| | |||||||||||||||| |||||||||| || ||||||    
T  268614 agggtgagactattattcaattatattaagcctgtaattctgatgattagatttaacaagtgtaggatta 268545  T

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Target: scaffold0357 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4910 - 4796
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagg-gtgggattagttttggaggatttgagaattagggttag 99  Q
    |||||| ||||| ||||||||  |||||||||  | ||||||||| ||  |||||||| |  || ||||||||||| ||| |||||||||||| |||||     
T  4910 agggtgggactagcattcaattctattaagtctatgattctgatggttgtatttaacaggttgtaggattagtttttgagaatttgagaatta-ggttaa 4812  T
Q  100 agtgaggaattgatga 115  Q
    |||||| |||||||||    
T  4811 agtgagaaattgatga 4796  T

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Target: scaffold0357; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 4793 - 4761
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  4793 aattgatgaaaaattgttagattgatgtagaaa 4761  T

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Target: scaffold0107 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13559 - 13618
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaag 60  Q
    |||||| ||||||||||||||||| ||||| |  ||||||||||||||| | ||||||||    
T  13559 agggtgggactaacattcaatcttcttaagccgttaattctgatgattagacttaacaag 13618  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 127466 - 127500
Alignment:
Q  132 tgttgaaagagtaggtaaatcattgaattaacgta 166  Q
    ||||||||||||||||||| |||||||||||||||    
T  127466 tgttgaaagagtaggtaaaccattgaattaacgta 127500  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 29621 - 29564
Alignment:
Q  53 ttaacaagggtgggattagttttggaggatttgagaattagggttagagtgaggaatt 110  Q
    |||||||| || ||||| ||||| ||| |||||||||||||||||| |||||| ||||    
T  29621 ttaacaagtgtaggattggttttagagaatttgagaattagggttaaagtgagaaatt 29564  T

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Target: scaffold0098; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29556 - 29524
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  29556 aattgatgaaaaattgttagattgatgtagaaa 29524  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7254 - 7197
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaaca 58  Q
    |||||| ||||||||||||||||| ||||| |  | ||||||||||||| ||||||||    
T  7254 agggtgggactaacattcaatcttcttaagcctatgattctgatgattatatttaaca 7197  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 17149 - 17225
Alignment:
Q  35 taattctgatgattaaatttaacaagggtgggattagttttggaggatttgagaattagggttagagtgaggaattga 112  Q
    ||||||||||| ||  ||||||||||||| |||||  |||| ||| ||| |||||||||||||| |||||| ||||||    
T  17149 taattctgatggttgtatttaacaagggtaggattgattttagagaattggagaattagggtta-agtgagaaattga 17225  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 163566 - 163619
Alignment:
Q  3 ggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaa 56  Q
    |||||||||||||||||||||| ||||| |  | |||||||| |||||||||||    
T  163566 ggtgagactaacattcaatcttcttaagcctatgattctgataattaaatttaa 163619  T

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Target: scaffold0320 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12906 - 12838
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatt 69  Q
    |||||||||||||| | ||||  ||||||||| |||||||||||| ||  |||||||||| || |||||    
T  12906 agggtgagactaacttacaattctattaagtctgtaattctgatggttgtatttaacaagtgtaggatt 12838  T

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Target: scaffold0261 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 17527 - 17579
Alignment:
Q  53 ttaacaagggtgggattagttttggaggatttgagaattagggttagagtgag 105  Q
    |||||||| || ||||| ||||| ||| |||||||||||||||||| ||||||    
T  17527 ttaacaagtgtaggattggttttagagaatttgagaattagggttaaagtgag 17579  T

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Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 17592 - 17624
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  17592 aattgatgaaaaattgttagattgatgtagaaa 17624  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 33793 - 33825
Alignment:
Q  107 aattgatgaaaaattgttagattgatgttgaaa 139  Q
    |||||||||||||||||||||||||||| ||||    
T  33793 aattgatgaaaaattgttagattgatgtagaaa 33825  T

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Target: scaffold0162 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25482 - 25550
Alignment:
Q  1 agggtgagactaacattcaatcttattaagtccgtaattctgatgattaaatttaacaagggtgggatt 69  Q
    |||||||||||||| | ||||  ||||||||| |||||||||||||||  ||||| |||| || |||||    
T  25482 agggtgagactaacttacaattctattaagtctgtaattctgatgattgtatttagcaagtgtaggatt 25550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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