View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_8 (Length: 565)
Name: NF19755_low_8
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 11643096 - 11643540
Alignment:
| Q |
18 |
gttgggatgtttattcattagagacttttgnnnnnnnnnnnnntgcaaagaggactcgtgagcttcctactctttggaaggtttaactttgatgtttaat |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11643096 |
gttgggatgtttattcattagagacttttggagagagagagagtgcaaagaggactcgtgagcttcctactctttggaaggtttaactttgatgtttaat |
11643195 |
T |
|
| Q |
118 |
ttattcattcttttaacatattgcagtcatgttgtatgcttaacagatggaaatattttagttatccattaagtagtatgcataagtgacatcaaattta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11643196 |
ttattcattcttttaacatattgcagtcatgttgtatacttaacagatggaaatattttagttctccattaagtagtatgcataagtgacatcaaattta |
11643295 |
T |
|
| Q |
218 |
tgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactcttttgagatttcagaataaaaatgtgtgttcaatttatgg-----nnn |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11643296 |
tgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactc-tttgagatttcagaataaaaatgtgtgttcaatttatggttttttgt |
11643394 |
T |
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| Q |
313 |
nnnngtcaatttccatggctattacttcacaattgtttggctggtggtactggttttgttttatcatatatagtattatagttcttatagtacaacaaat |
412 |
Q |
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| T |
11643395 |
agttgtcaatttccatggctattacttcacaattgtttggc---tggtactggttttgttttatcatatttagtattatagttcttatagtacaacaaat |
11643491 |
T |
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| Q |
413 |
cattaacacaaataatgaaacaacaaaattgctagcttatagttcttat |
461 |
Q |
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| T |
11643492 |
cattaacacaaataatgaaacaacaaaattgctagcttatagttcttat |
11643540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 62 - 309
Target Start/End: Original strand, 11624652 - 11624897
Alignment:
| Q |
62 |
gcaaagaggactcgtgagcttcctactctttggaaggtttaactttgatgtttaatttattcattcttttaacatattgcagtcatgttgtatgcttaac |
161 |
Q |
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| T |
11624652 |
gcaaagaggactcgtgagcttcctactctttggaaggtttaactttggtgtttgatttatttattcttttaa-atattgcaatcatgttgtatgcttaac |
11624750 |
T |
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| Q |
162 |
agatggaaatattttagttatccattaagtagtatgcataagtgacatcaaatttatgttaagtttcaaccaaataaatcagggagcataatctgttttt |
261 |
Q |
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||||||| || |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11624751 |
agatggatattttttagttttccattatgtagtatgcacaagtgacatcaaatttatgttaagtttcaaccaaataaatcatggagcataatctgttttt |
11624850 |
T |
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| Q |
262 |
gtgaactcttttgagatttcagaataaaaatgtgtgttcaatttatgg |
309 |
Q |
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| T |
11624851 |
gtgaactc-tttgagatttcagaataaaaatgtatgttcaatttatgg |
11624897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 11643606 - 11643664
Alignment:
| Q |
497 |
aatactgttgagagaaggagagatttatggagatggtgggaatgaggtgaggcacaggt |
555 |
Q |
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| T |
11643606 |
aatactgttgagagaaggagagatttatagagatggtgggaatgaggtgaggcacaggt |
11643664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 11602685 - 11602589
Alignment:
| Q |
211 |
aaatttatgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactcttttgagatttcagaataaaaatgt-gtgttcaatttatgg |
309 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| || |||| ||||||| ||||||| | |||||||||||||| |||||||||||||| |
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| T |
11602685 |
aaatttatgttaagtttcaaccaaataaataagggagtataatatg-ttttatgaactc-tttgaga-tgcagaataaaaatgtattgttcaatttatgg |
11602589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 11643528 - 11643564
Alignment:
| Q |
466 |
ttatagttcttatgaaacaacaaatcattaaaatact |
502 |
Q |
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| T |
11643528 |
ttatagttcttatgaaacaacaaatcattaaaatact |
11643564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 11602859 - 11602830
Alignment:
| Q |
18 |
gttgggatgtttattcattagagacttttg |
47 |
Q |
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| T |
11602859 |
gttgggatgtttattcattagagacttttg |
11602830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 11624590 - 11624619
Alignment:
| Q |
18 |
gttgggatgtttattcattagagacttttg |
47 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11624590 |
gttgggatgtttattcattagagacttttg |
11624619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 11602797 - 11602753
Alignment:
| Q |
62 |
gcaaagaggactcgtgagcttcctactctttggaaggtttaactt |
106 |
Q |
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|||| |||||||| | ||||||||||||||||||||| ||||||| |
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| T |
11602797 |
gcaatgaggactcttcagcttcctactctttggaaggcttaactt |
11602753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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