View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_9 (Length: 564)
Name: NF19755_low_9
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 10984589 - 10985032
Alignment:
| Q |
19 |
gtctcgtgttcaaccttaatatattcttattgtttgtttgtatttacaccccctcccctcgtgtcatatgattcttatgcatggtataattgtaggaatg |
118 |
Q |
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| T |
10984589 |
gtctcgtgttcaaccttaatatattcttattgtttgtttgtatttacaccccctcccctcgtgtcatatgattcttatgcatggtataattgtaggaatg |
10984688 |
T |
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| Q |
119 |
ccattgcattcacatgttcctttttgaatttcgaaagcggtcacaatcataatcatatgattttgtaattagtctaaattaagtgattattggattatgt |
218 |
Q |
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| T |
10984689 |
ccattgcattcacatgttcctttttgaatttcgaaagcggtcacaatcataatcatatgattttgtaattagtctaaattaagtgattattggattatgt |
10984788 |
T |
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| Q |
219 |
aattaaggggtagtaggtttggtttattaacctttacctgacggaatgagtcagagattttgtctccattgcttatggtggagtgaataaaacgttaatt |
318 |
Q |
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| T |
10984789 |
aatcaaggggtagtaggtttggtttattaacctttacctgacggaatgagtcagagattttgtctccattgcttatggtggagtgaataaaacgttaatt |
10984888 |
T |
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| Q |
319 |
ataaatgattgaacatgcttttaaccttagttagagcatcattaatagatgtaacttagaggttgttaacgatatgaatattgctaacaagtaccttaaa |
418 |
Q |
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| T |
10984889 |
ataaatgattgaacatgcttttaaccttagttagagcatcattaatagatgtaacttagaggttgttaactataagaatattgctaacaagtacctt-aa |
10984987 |
T |
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| Q |
419 |
agttaggttaattgttaaggatttaaaatataaacaatgtgttaa |
463 |
Q |
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| T |
10984988 |
agttaggttagttgttaaggatttaaaatataaacaatgtgttaa |
10985032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 10985078 - 10985137
Alignment:
| Q |
495 |
atcaagtgtttttagggtatttgttagcannnnnnnaacgataaaaaatgtttacctatg |
554 |
Q |
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| T |
10985078 |
atcaagtgtttttagagtatttgttagcatttttttaacgataaaaaatgtttacctatg |
10985137 |
T |
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