View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_high_1 (Length: 611)

Name: NF19756_high_1
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_high_1
NF19756_high_1
[»] chr8 (5 HSPs)
chr8 (20-597)||(37686391-37686968)
chr8 (371-597)||(33220540-33220753)
chr8 (245-405)||(4640713-4640873)
chr8 (257-383)||(43635142-43635268)
chr8 (277-323)||(33800498-33800544)
[»] chr2 (10 HSPs)
chr2 (242-405)||(37891619-37891782)
chr2 (242-398)||(12967267-12967424)
chr2 (312-398)||(11713076-11713162)
chr2 (283-383)||(22496013-22496116)
chr2 (268-383)||(11712981-11713097)
chr2 (312-398)||(22495947-22496034)
chr2 (277-405)||(2154294-2154423)
chr2 (314-383)||(18394910-18394979)
chr2 (314-383)||(42121933-42122002)
chr2 (312-398)||(42121866-42121954)
[»] chr7 (9 HSPs)
chr7 (245-405)||(30362795-30362955)
chr7 (241-358)||(42548157-42548273)
chr7 (312-393)||(38790969-38791050)
chr7 (245-383)||(1537186-1537324)
chr7 (312-398)||(48211897-48211984)
chr7 (277-383)||(48211812-48211918)
chr7 (315-383)||(31826114-31826182)
chr7 (316-383)||(26502371-26502438)
chr7 (316-383)||(26590276-26590343)
[»] chr3 (12 HSPs)
chr3 (306-405)||(47068195-47068294)
chr3 (277-383)||(53824322-53824428)
chr3 (242-398)||(2325485-2325642)
chr3 (242-398)||(44833467-44833629)
chr3 (277-383)||(35485275-35485383)
chr3 (314-398)||(42387851-42387936)
chr3 (283-383)||(42947413-42947514)
chr3 (312-398)||(35485362-35485449)
chr3 (314-398)||(42993635-42993719)
chr3 (312-398)||(16967853-16967942)
chr3 (312-398)||(53824407-53824496)
chr3 (314-355)||(42947495-42947536)
[»] chr1 (5 HSPs)
chr1 (245-383)||(39650196-39650334)
chr1 (312-398)||(47485505-47485593)
chr1 (312-398)||(39650313-39650402)
chr1 (257-383)||(45690987-45691114)
chr1 (245-301)||(11821160-11821216)
[»] chr4 (15 HSPs)
chr4 (262-383)||(53265809-53265931)
chr4 (283-383)||(28796658-28796758)
chr4 (312-398)||(53265910-53265996)
chr4 (314-398)||(33161699-33161783)
chr4 (282-398)||(46813892-46814007)
chr4 (277-398)||(36174503-36174625)
chr4 (271-383)||(47043928-47044041)
chr4 (248-383)||(40312731-40312869)
chr4 (248-383)||(40322807-40322945)
chr4 (320-398)||(42099431-42099510)
chr4 (312-354)||(40312710-40312752)
chr4 (312-354)||(40322786-40322828)
chr4 (312-398)||(887073-887161)
chr4 (256-333)||(1228030-1228106)
chr4 (312-398)||(28796737-28796825)
[»] scaffold1455 (2 HSPs)
scaffold1455 (277-383)||(313-419)
scaffold1455 (312-383)||(263-334)
[»] chr6 (4 HSPs)
chr6 (277-383)||(14830424-14830530)
chr6 (296-383)||(16444320-16444407)
chr6 (244-383)||(14153353-14153492)
chr6 (312-398)||(14153471-14153558)
[»] chr5 (8 HSPs)
chr5 (277-383)||(1974188-1974294)
chr5 (257-354)||(19401967-19402065)
chr5 (277-383)||(40017292-40017398)
chr5 (278-383)||(3461524-3461629)
chr5 (312-370)||(19401921-19401979)
chr5 (312-387)||(40017237-40017313)
chr5 (312-398)||(1974273-1974360)
chr5 (312-398)||(3461457-3461545)
[»] scaffold0016 (1 HSPs)
scaffold0016 (243-389)||(69720-69866)


Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Original strand, 37686391 - 37686968
Alignment:
Q  20 aacatttaataaatgacttcatttcatatatcctagttgtggaggtatatttcgggtgatgaattctctatattgttggggtgttgtggtgtacatgtgg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686391 aacatttaataaatgacttcatttcatatatcctagttgtggaggtatctttcgggtgatgaattctctatattgttggggtgttgtggtgtacatgtgg 37686490  T
Q  120 ctgaattgaactcaaagaaagaggtgtaccaaggttcagttggaggtgtggttagtgctcttgtagacgacaatagagtatatcatgaagcttacagtgc 219  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37686491 ctgaattgaactcaaagaaagaggtgtaccaaggttgagttggaggtgtggttagtgctcttgtagacgacaatagagtctatcatgaagcttacagtgc 37686590  T
Q  220 aaaagctctagatagtatggggtaagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaaca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37686591 aaaagctctagatagtatggggtaagaattctcctctttacccaaatcgtttcgttcattcccaaagtaaaagtctaaaatggccttgcgcaacttaaca 37686690  T
Q  320 tgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgccgcgtcagttaact 419  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| | ||||||||    
T  37686691 tgcactagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgagcgtgacttaagtcacaccgcatgagttaact 37686790  T
Q  420 cacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcctttcttccttcctcacgttctattgaatcggttgttgtgtaacagcccat 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  37686791 cacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcctttcttccttcctcacattctattgaatcggttgttgtgtaacaacccat 37686890  T
Q  520 gcttttgataatctaatcaccctgctcttgtttctcacatgctattgaattccaatttaacagaaacctttgcctttg 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37686891 gcttttgataatctaatcaccctgctcttgtttctcacatgctattgaattcaaatttaacagaaacctttgcctttg 37686968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 371 - 597
Target Start/End: Complemental strand, 33220753 - 33220540
Alignment:
Q  371 gcgctagtgtattatgaacgtgacttaagttacgccgcgtcagttaactcacgctgagaagaaaaaacatttctccttcaaacccagtttctttctgcct 470  Q
    ||||||||||||| ||| |||||||||||| |||| |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  33220753 gcgctagtgtattttgagcgtgacttaagtcacgcagcgtgagttaactcacgccgggaagaaaaaacatttctccttcaaacccagtttctttctgcct 33220654  T
Q  471 ttcttccttcctcacgttctattgaatcggttgttgtgtaacagcccatgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaatt 570  Q
    ||||||||||||||| | ||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33220653 ttcttccttcctcacatgctattgaatcggttgt-------------atgcttttgataatctaatcaccctgctcttgtttctcacatgctattgaatt 33220567  T
Q  571 ccaatttaacagaaacctttgcctttg 597  Q
    |||||| | ||||||||||||||||||    
T  33220566 ccaattcatcagaaacctttgcctttg 33220540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 245 - 405
Target Start/End: Complemental strand, 4640873 - 4640713
Alignment:
Q  245 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 344  Q
    ||||||| ||| |||||||||  || ||| | ||| | |||||||||| |||||||| || | | |||||||||||||||||||||||||| ||| ||||    
T  4640873 gaattctgctcattacccaaactgtatcgctcatttccaaagtaaaagactaaaatgcccctacacaacttaacatgcgctagtgtattttttacatatg 4640774  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 405  Q
    ||||| |||| | | |||||| ||||||||||||||||| | |||||||||||||| ||||    
T  4640773 ttaagccacgcttcgtgacttaacatgcgctagtgtattcttaacgtgacttaagtcacgc 4640713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 257 - 383
Target Start/End: Original strand, 43635142 - 43635268
Alignment:
Q  257 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgtt 356  Q
    |||| ||||| ||| |||||||| |||||||||| ||||| | || || | ||||  |||||||||||||||||| |||||||||||||||||| ||| |    
T  43635142 ttactcaaatggttccgtttatttctaaagtaaatgtctatattgcccgtacgcatgttaacatgcgctagtgtaatttgtacttatgttaagttacgct 43635241  T
Q  357 gcatgacttgacatgcgctagtgtatt 383  Q
     | |||||| |||||||||||||||||    
T  43635242 tcgtgacttaacatgcgctagtgtatt 43635268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 33800544 - 33800498
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcg 323  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||    
T  33800544 attcctaaagtaaatgtctaaaatgcccttgcgcatgttaacatgcg 33800498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 37891619 - 37891782
Alignment:
Q  242 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtactt 341  Q
    |||||||||| |||||||  |||||| ||||  | ||||| ||| ||||||||||||||| || ||| |||||||||||| |||||||||||||||||||    
T  37891619 taagaattctgctctttattcaaatcatttcagtcattcccaaactaaaagtctaaaatgcccctgcacaacttaacatgtgctagtgtattttgtactt 37891718  T
Q  342 atgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 405  Q
    |||||||||||| || | |||||| |||||| |||||||||||||| |||||||||||| ||||    
T  37891719 atgttaagtcacattacgtgacttaacatgcactagtgtattatgagcgtgacttaagtcacgc 37891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 398
Target Start/End: Original strand, 12967267 - 12967424
Alignment:
Q  242 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaa-gtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact 340  Q
    |||||||||| ||| ||||| |||| ||| || | ||||  ||||||||| ||| |||||  || | ||||  ||||||||||||  ||||||||||||     
T  12967267 taagaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcgctgctgtattttgtacc 12967366  T
Q  341 tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||| | | |||||| || |||||||||||||| ||||||||| ||||    
T  12967367 tatgttaagtcacgctacgtgacttaacttgcgctagtgtattctgaacgtgagttaa 12967424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 11713076 - 11713162
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||||||| || |||||||||||| || |||||| || ||| | |||||||| ||| ||||| ||||    
T  11713076 acttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacttgcacaagtgtattctgagcgtgagttaa 11713162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 383
Target Start/End: Complemental strand, 22496116 - 22496013
Alignment:
Q  283 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtg 379  Q
    |||||||| |||||||||| |||| ||||  |||||||||| |||||||   |||| ||| |||||||||||||| | | |||||| |||||||||||||    
T  22496116 aaagtaaatgtctaaaatgcccttacgcatgttaacatgcgatagtgtatttttttttacctatgttaagtcacgctacgtgacttaacatgcgctagtg 22496017  T
Q  380 tatt 383  Q
    ||||    
T  22496016 tatt 22496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 11712981 - 11713097
Alignment:
Q  268 gtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttg 366  Q
    |||||| | ||||| |||||||||||| |||||| || | || |  ||||||||||||||| ||| | |||||||||||||||||| | | | ||||||     
T  11712981 gtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcgctagttgtaatatgtacttatgttaagtcatgctacgtgactta 11713080  T
Q  367 acatgcgctagtgtatt 383  Q
    |||||||||||||||||    
T  11713081 acatgcgctagtgtatt 11713097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 22496034 - 22495947
Alignment:
Q  312 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| | || || |||||||||||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  22496034 acttaacatgcgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 22495947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 405
Target Start/End: Original strand, 2154294 - 2154423
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgct 375  Q
    ||||| ||||||||||   |||||| || | |||||||||||||||  ||||||||||| | || |||||||||||||| | | |||||| |||||| ||    
T  2154294 attcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgcattagtgtatttttttacctatgttaagtcacgctacgtgacttaacatgcact 2154393  T
Q  376 agtgtattatgaacgtgacttaagttacgc 405  Q
    |||| ||| | | |||||||||||| ||||    
T  2154394 agtgcattcttagcgtgacttaagtcacgc 2154423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 18394979 - 18394910
Alignment:
Q  314 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||||||||||||||| ||| |||||||||||| | | | |||||| ||| |||||||||||||    
T  18394979 ttaacatgcgctagtgtattttttacctatgttaagtcaagctacgtgacttaacacgcgctagtgtatt 18394910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 42122002 - 42121933
Alignment:
Q  314 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||| ||||||||||| ||| |||||||||||||  | | |||||| |||||||||||||||||    
T  42122002 ttaacatgcgttagtgtattttttacctatgttaagtcacactacgtgacttaacatgcgctagtgtatt 42121933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 42121954 - 42121866
Alignment:
Q  312 acttaacatgcgctagtgta--ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||  |||| ||| || |||||||||||| |  |||||  || |||||||||||||| ||| ||||| ||||    
T  42121954 acttaacatgcgctagtgtattttttttacctaagttaagtcacgtagtgtgactgaacttgcgctagtgtattctgagcgtgagttaa 42121866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 245 - 405
Target Start/End: Complemental strand, 30362955 - 30362795
Alignment:
Q  245 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 344  Q
    ||||||| |||||||   ||||||||||| | |||| ||||||||||||  ||||||  | |||||||||||||||| ||||||||||| ||||||||||    
T  30362955 gaattctgctctttatttaaatcgtttcgctcattcttaaagtaaaagttcaaaatgctcatgcgcaacttaacatgtgctagtgtattatgtacttatg 30362856  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 405  Q
    |||||||||||| | |||||| | ||||||||||||||||||| |||||||||||| ||||    
T  30362855 ttaagtcacgttacgtgacttaagatgcgctagtgtattatgagcgtgacttaagtcacgc 30362795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 241 - 358
Target Start/End: Original strand, 42548157 - 42548273
Alignment:
Q  241 gtaagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact 340  Q
    ||||||||||| ||| ||||||||||||||| | | ||||| |||||||||||| |||||  | | ||||||||||||||||||||| ||||||||||||    
T  42548157 gtaagaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaatttcat-gcgcaacttaacatgcgctagcgtattttgtact 42548255  T
Q  341 tatgttaagtcacgttgc 358  Q
    |||||||||||| |||||    
T  42548256 tatgttaagtcatgttgc 42548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 38790969 - 38791050
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtga 393  Q
    |||||||||||||||||||||||||||| || |||||||||||| || |||||| || |||||||||||||| ||| |||||    
T  38790969 acttaacatgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtga 38791050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 383
Target Start/End: Complemental strand, 1537324 - 1537186
Alignment:
Q  245 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 344  Q
    ||||||| ||| |||||||||  || ||||| ||||  |||||||| ||  |||||| || ||||||  |||||||||||||||||||||| ||| ||||    
T  1537324 gaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcgctagtgtattttttacctatg 1537225  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||| | | | |||| |||| |||| |||||||    
T  1537224 ttaagtcacgctacgttacttaacatacgctggtgtatt 1537186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 48211897 - 48211984
Alignment:
Q  312 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| | || || |||||||||||| | ||||||| || |||||||||||||| ||| ||||| ||||    
T  48211897 acttaacatgcgctagtgtattttcttacctaagttaagtcacgtagtatgacttaacttgcgctagtgtattctgagcgtgagttaa 48211984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 48211812 - 48211918
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||||||||||||  | ||||||| || ||||||  |||||||| | ||||||||||| ||||||||||||  |  ||| | |||||| ||||||||||    
T  48211812 attcctaaagtaaatttttaaaatgtccatgcgcatgttaacatgtgttagtgtattttttacttatgttaaaccgtgttacgtgacttaacatgcgcta 48211911  T
Q  377 gtgtatt 383  Q
    |||||||    
T  48211912 gtgtatt 48211918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 31826182 - 31826114
Alignment:
Q  315 taacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    ||||| ||||||||||||||| ||  || |||||||||||| || |||||| || ||||||||||||||    
T  31826182 taacaagcgctagtgtattttttatctaagttaagtcacgtagcgtgacttaacttgcgctagtgtatt 31826114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 26502438 - 26502371
Alignment:
Q  316 aacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||||||||| | |||| ||||||||||||||| | | || ||| |||||||| ||||||||    
T  26502438 aacatgcgctagtgtaatctgtatttatgttaagtcacgctacgtggcttaacatgcgccagtgtatt 26502371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 26590276 - 26590343
Alignment:
Q  316 aacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||||||||| | |||| ||||||||||||||| | | || ||| |||||||| ||||||||    
T  26590276 aacatgcgctagtgtaatctgtatttatgttaagtcacgctacgtggcttaacatgcgccagtgtatt 26590343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 405
Target Start/End: Complemental strand, 47068294 - 47068195
Alignment:
Q  306 tgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaagttacgc 405  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||  | |||||| ||||||||||||||||||||| |||||||||||| ||||    
T  47068294 tgcgcaacttaacatacgctaatgtattatgtacttatgttaagtcacgtaacgtgacttaacatgcgctagtgtattatgagcgtgacttaagtcacgc 47068195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 53824322 - 53824428
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||| |||||||| | || ||||| || ||||||  |||||||||||||||||| ||| ||| |||||||||||||| | | |||||| ||||||||||    
T  53824322 attcccaaagtaaatgactgaaatgcccatgcgcatgttaacatgcgctagtgtaatttttacctatgttaagtcacgctacgtgacttaacatgcgcta 53824421  T
Q  377 gtgtatt 383  Q
    |||||||    
T  53824422 gtgtatt 53824428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 2325642 - 2325485
Alignment:
Q  242 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgta-ct 340  Q
    ||||||||||  || ||| | |||| |||||||  ||||| ||||||||||| ||||||| || | ||||  ||||||||||||||||||||||||| ||    
T  2325642 taagaattctggtcattatctaaatggtttcgtccattcccaaagtaaaagtttaaaatgtccctacgcatgttaacatgcgctagtgtattttgtacct 2325543  T
Q  341 tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
     | |||| ||||| | || |||||| || |||||||||||||| ||| ||||| ||||    
T  2325542 aaagttatgtcacatagcgtgacttaacttgcgctagtgtattttgagcgtgagttaa 2325485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 398
Target Start/End: Original strand, 44833467 - 44833629
Alignment:
Q  242 taagaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtact 340  Q
    |||||||||| ||| |||||||||| ||| |||||||| | |||||||||||| |||||| || | ||||  |||||||| |||||| ||| | | ||||    
T  44833467 taagaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaacatgtgctagttgtaatctatact 44833566  T
Q  341 tatgttaagtcac-----gttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||     || || |||||| || |||||||||||||| ||| ||||| ||||    
T  44833567 tatgttaagtcaccctacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 44833629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 35485275 - 35485383
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgc 374  Q
    |||| ||||||||| || ||||||| || ||| ||  ||||||||||||||| |||||| |  || |||||||||||||||| | |||||| ||||||||    
T  35485275 attcttaaagtaaatgtttaaaatgcccctgcacatgttaacatgcgctagtatattttttttacctatgttaagtcacgttacgtgacttaacatgcgc 35485374  T
Q  375 tagtgtatt 383  Q
    |||||||||    
T  35485375 tagtgtatt 35485383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 42387936 - 42387851
Alignment:
Q  314 ttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||| | || |||||||||||||| | | |||||| ||||||||||||||||| ||| ||||| ||||    
T  42387936 ttaacatgcgctagtgtatttttttacctatgttaagtcacgctacgtgacttaacatgcgctagtgtattctgagcgtgagttaa 42387851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 42947413 - 42947514
Alignment:
Q  283 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgta 381  Q
    |||||||||||| ||||||  | | ||||  ||||||||||||||| ||| | |||||||||||||||||||| | | ||| || |||||||||||||||    
T  42947413 aaagtaaaagtccaaaatgctcctacgcatgttaacatgcgctagttgtaatatgtacttatgttaagtcacgctacctgatttaacatgcgctagtgta 42947512  T
Q  382 tt 383  Q
    ||    
T  42947513 tt 42947514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 35485362 - 35485449
Alignment:
Q  312 acttaacatgcgctagtgta-ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||| |||| ||| || ||||||| |||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  35485362 acttaacatgcgctagtgtatttttttacctaagttaagttacgtagcgtgacttaacctgcgctagtgtattctgagcgtgagttaa 35485449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 42993635 - 42993719
Alignment:
Q  314 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||||  || ||||| |||||||| | | |||||| || ||| |||||||||| ||| ||||| ||||    
T  42993635 ttaacatgcgctagtgtatttttaacctatgtaaagtcacgctacgtgacttaacttgcactagtgtattctgagcgtgagttaa 42993719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 16967942 - 16967853
Alignment:
Q  312 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| |  |||||||||||||| ||| ||||| ||||    
T  16967942 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaatttgcgctagtgtattctgagcgtgagttaa 16967853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 53824407 - 53824496
Alignment:
Q  312 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| |  |||||||||||||| ||| ||||| ||||    
T  53824407 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaagttgcgctagtgtattctgagcgtgagttaa 53824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 42947495 - 42947536
Alignment:
Q  314 ttaacatgcgctagtgtattttgtacttatgttaagtcacgt 355  Q
    |||||||||||||||||||||| ||| || ||||||||||||    
T  42947495 ttaacatgcgctagtgtattttttacctaagttaagtcacgt 42947536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 245 - 383
Target Start/End: Original strand, 39650196 - 39650334
Alignment:
Q  245 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatg 344  Q
    ||||||| ||| ||||| |||| |||||| | |||||||||||||| ||| |||||| || | ||||  |||||||||||||||||||||| ||| ||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgctagtgtattttctacctatg 39650295  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||||||| | | |||||| |||||||||||||||||    
T  39650296 ttaagtcacgctacgtgacttaacatgcgctagtgtatt 39650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 47485505 - 47485593
Alignment:
Q  312 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| |  || || |||||||||||| || |||||| || |||||||||||||| ||| ||||| ||||    
T  47485505 acttaacatgcgctagtgtattttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattctgagcgtgagttaa 47485593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 39650313 - 39650402
Alignment:
Q  312 acttaacatgcgctagtgta---ttttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||   |||| ||| || |||||||||||| || |||||| || ||| |||||||||| ||| ||||| ||||    
T  39650313 acttaacatgcgctagtgtatttttttttacctaagttaagtcacgtagcgtgacttaacttgctctagtgtattctgagcgtgagttaa 39650402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 383
Target Start/End: Complemental strand, 45691114 - 45690987
Alignment:
Q  257 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctag-tgtattttgtacttatgttaagtcacgt 355  Q
    |||| ||||| |||||| | ||||| |||||||||||| |||||| || | | ||  |||||||| ||||| | || | |||||||||||||||||  |     
T  45691114 ttactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatgagctagttataatgtgtacttatgttaagtctagc 45691015  T
Q  356 tgcatgacttgacatgcgctagtgtatt 383  Q
    | | |||||| |||||||||||||||||    
T  45691014 tacgtgacttaacatgcgctagtgtatt 45690987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 11821160 - 11821216
Alignment:
Q  245 gaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatg 301  Q
    ||||||| ||| ||| |||||| |||||||| ||||| |||||||||||| ||||||    
T  11821160 gaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatg 11821216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 383
Target Start/End: Original strand, 53265809 - 53265931
Alignment:
Q  262 caaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcat 360  Q
    ||||| |||||| | ||||||||||||||| || ||||||  | | ||||  ||||||||||||||| ||| |||||||||||||||||||||| | | |    
T  53265809 caaatggtttcgctcattcctaaagtaaaattccaaaatgctcctacgcatgttaacatgcgctagttgtaatttgtacttatgttaagtcacgctacgt 53265908  T
Q  361 gacttgacatgcgctagtgtatt 383  Q
    ||||| |||||||||||||||||    
T  53265909 gacttaacatgcgctagtgtatt 53265931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 28796658 - 28796758
Alignment:
Q  283 aaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtat 382  Q
    |||||||| ||| |||||| || || |||  |||||| ||||||||||||||| ||  |||||||||||||| | |||||||| ||||||||||||||||    
T  28796658 aaagtaaatgtccaaaatgtccatgtgcatgttaacacgcgctagtgtattttttatctatgttaagtcacgctacatgacttaacatgcgctagtgtat 28796757  T
Q  383 t 383  Q
    |    
T  28796758 t 28796758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 53265910 - 53265996
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| ||| || |||||||||||| || |||||| || ||||||||||| || ||| ||||| ||||    
T  53265910 acttaacatgcgctagtgtattttatacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtgttctgagcgtgagttaa 53265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 398
Target Start/End: Original strand, 33161699 - 33161783
Alignment:
Q  314 ttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||| |||||||||||| ||| |||||||||||||| |   |||||| ||||||||||||||||| ||| ||||| ||||    
T  33161699 ttaacatgcactagtgtattttttacctatgttaagtcacgctatgtgacttaacatgcgctagtgtattctgagcgtgagttaa 33161783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 282 - 398
Target Start/End: Original strand, 46813892 - 46814007
Alignment:
Q  282 taaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtact-tatgttaagtcacgttgcatgacttgacatgcgctagtgt 380  Q
    ||||||||||||||||  || || | ||||  |||||||||| ||||||||||| |  | |||||||||||||| | |||||||| |||||||||||||     
T  46813892 taaagtaaaagtctaa--tgcccctacgcatattaacatgcgttagtgtatttttttatctatgttaagtcacgctacatgacttaacatgcgctagtgc 46813989  T
Q  381 attatgaacgtgacttaa 398  Q
    ||||||| ||||| ||||    
T  46813990 attatgagcgtgagttaa 46814007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 36174625 - 36174503
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagt-gtattttgtacttatgttaagtcacgttgcatgacttgacatgcgct 375  Q
    ||||| ||||||||| || |||||| |  | ||||  ||||||||||| ||| ||| | |||||||||||||||||||| | | |||||| || ||||||    
T  36174625 attcccaaagtaaaaatccaaaatgccactacgcatgttaacatgcgccagttgtaatatgtacttatgttaagtcacgctacgtgacttaacttgcgct 36174526  T
Q  376 agtgtattatgaacgtgacttaa 398  Q
    |||||||| ||| ||||| ||||    
T  36174525 agtgtattctgagcgtgagttaa 36174503  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 383
Target Start/End: Complemental strand, 47044041 - 47043928
Alignment:
Q  271 tcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgta-ttttgtacttatgttaagtcacgttgcatgacttgaca 369  Q
    ||||| ||||||||||||||  |  |||||| || ||||||  |||||||| ||||||||| |||| ||| ||||||||||| || | | ||| || |||    
T  47044041 tcgttcattcctaaagtaaatattcaaaatgcccctgcgcatgttaacatgtgctagtgtatttttttacctatgttaagtcgcgctacgtgagttaaca 47043942  T
Q  370 tgcgctagtgtatt 383  Q
    ||||||||||||||    
T  47043941 tgcgctagtgtatt 47043928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 383
Target Start/End: Complemental strand, 40312869 - 40312731
Alignment:
Q  248 ttctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattt---tgtacttatg 344  Q
    |||| ||| ||||||||||  ||||| | ||| | ||||||||||||||||||   ||| || |  |||||||||||||||||| |    ||||||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtgtaatagtatgtacttatg 40312770  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    ||| |||||| | | |||||| |||||||||||| ||||    
T  40312769 ttaggtcacgctacgtgacttaacatgcgctagtatatt 40312731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 383
Target Start/End: Complemental strand, 40322945 - 40322807
Alignment:
Q  248 ttctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattt---tgtacttatg 344  Q
    |||| ||| ||||||||||  ||||| | ||| | ||||||||||||||||||   ||| || |  |||||||||||||||||| |    ||||||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcgctagtgtaatagtatgtacttatg 40322846  T
Q  345 ttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    ||| |||||| | | |||||| |||||||||||| ||||    
T  40322845 ttaggtcacgctacgtgacttaacatgcgctagtatatt 40322807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 398
Target Start/End: Complemental strand, 42099510 - 42099431
Alignment:
Q  320 tgcgctagtgtattttgta-cttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||| || | || |||||||||||| || |||||| |  |||||||||||||| ||||||||| ||||    
T  42099510 tgcgctagtgtattttttaacctaagttaagtcacgtagcgtgacttaagttgcgctagtgtattctgaacgtgagttaa 42099431  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 40312752 - 40312710
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacg 354  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  40312752 acttaacatgcgctagtatattttgtacctaagttaagtcacg 40312710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 40322828 - 40322786
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacg 354  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  40322828 acttaacatgcgctagtatattttgtacctaagttaagtcacg 40322786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 887161 - 887073
Alignment:
Q  312 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||| ||||| |  || || |||||||||||| || |||||| || ||||||||| |||| ||| ||||| ||||    
T  887161 acttaacatgcgctagtgaattttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtttattctgagcgtgagttaa 887073  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 1228106 - 1228030
Alignment:
Q  256 tttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtatt 333  Q
    ||||||||||| |||||| | ||||| || |||||  || |||||| |  ||||||||||||||||||||||||||||    
T  1228106 tttacccaaattgtttcgctcattcccaaggtaaagttc-aaaatgcctctgcgcaacttaacatgcgctagtgtatt 1228030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 28796737 - 28796825
Alignment:
Q  312 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| |  |  || |||||||||||| || |||||| || ||||||||||| || ||| ||||| ||||    
T  28796737 acttaacatgcgctagtgtattttttttatctaagttaagtcacgtagcgtgacttaacttgcgctagtgttttctgagcgtgagttaa 28796825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 419 - 313
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||| |||||||||||| |||||| |||| |   |||||||||||||||||||| | |||||||||||||||||||| | | |||||| | |||||||     
T  419 attcccaaagtaaaagtccaaaatgcccttacatgacttaacatgcgctagtgtaatctgtacttatgttaagtcacgctacgtgacttaatatgcgctg 320  T
Q  377 gtgtatt 383  Q
    |||||||    
T  319 gtgtatt 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 334 - 263
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| | | |||||| || ||||||||||||||    
T  334 acttaatatgcgctggtgtattttgtacctatgttaagtcacgctacgtgacttaacttgcgctagtgtatt 263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 14830424 - 14830530
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||| |||||||| ||| |||||| || | | ||  |||||||||||||||||||||| ||| |||||||||||||| | | |||||| ||||||||||    
T  14830424 attcccaaagtaaatgtccaaaatgtccctacacatgttaacatgcgctagtgtattttttacctatgttaagtcacgctacgtgacttaacatgcgcta 14830523  T
Q  377 gtgtatt 383  Q
    |||||||    
T  14830524 gtgtatt 14830530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 16444320 - 16444407
Alignment:
Q  296 aaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    |||||| || ||||||  |||||||||||||||||||||| ||| |||||||||| ||| | |||||||| |||||||||| ||||||    
T  16444320 aaaatgcccctgcgcatgttaacatgcgctagtgtattttttacctatgttaagttacgctacatgacttaacatgcgctaatgtatt 16444407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 14153353 - 14153492
Alignment:
Q  244 agaattctcctctttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttat 343  Q
    |||||||| ||| ||||||||||  ||| | | ||||| |||||||| | | |||||  || | ||||  |||||||||||||||||||||| ||| |||    
T  14153353 agaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcgctagtgtattttttacctat 14153452  T
Q  344 gttaagtcacgttgcatgacttgacatgcgctagtgtatt 383  Q
    ||| |||| || | | |||||| |||||||||||||||||    
T  14153453 gtttagtcgcgctacgtgacttaacatgcgctagtgtatt 14153492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 14153471 - 14153558
Alignment:
Q  312 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    |||||||||||||||||||||||| | ||||| | |||||||||| || |||||| |  |||||||||||| | ||| ||||| ||||    
T  14153471 acttaacatgcgctagtgtattttttaacttaagctaagtcacgtagcgtgacttaagttgcgctagtgtagtctgagcgtgagttaa 14153558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 1974188 - 1974294
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||| |||||||| ||| ||||||  ||||||||  |||||||||||||||||||||| ||| ||||||||||| | ||   |||||| ||||||||||    
T  1974188 attcccaaagtaaatgtccaaaatgctcttgcgcatgttaacatgcgctagtgtattttttacctatgttaagtcgcattatgtgacttaacatgcgcta 1974287  T
Q  377 gtgtatt 383  Q
    |||||||    
T  1974288 gtgtatt 1974294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 19402065 - 19401967
Alignment:
Q  257 ttacccaaatcgtttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctag-tgtattttgtacttatgttaagtcacg 354  Q
    |||||||||| |||||  | ||||  |||||||||||| |||||| || | ||||  |||||||||||||| |||| ||||||||||||||||||||||    
T  19402065 ttacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcgctagttgtaatttgtacttatgttaagtcacg 19401967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 40017398 - 40017292
Alignment:
Q  277 attcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgcta 376  Q
    ||||| ||| |||| |||||||||| |||| ||||  |||||||| ||||||||||||| ||| |||||| |||||| || | |||||| | || |||||    
T  40017398 attcccaaaataaatgtctaaaatgtccttacgcaggttaacatgtgctagtgtattttttacctatgttgagtcacattacgtgacttaaaattcgcta 40017299  T
Q  377 gtgtatt 383  Q
    |||||||    
T  40017298 gtgtatt 40017292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 3461629 - 3461524
Alignment:
Q  278 ttcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacatgcgctag 377  Q
    |||| ||| |||| |||||||||  || |||| || |||||||| ||||||| ||||| ||| |||||||||||||||| | |||||| |||| |||||     
T  3461629 ttcccaaaataaatgtctaaaatacccctgcgtaagttaacatgtgctagtgcattttttacctatgttaagtcacgttacgtgacttaacatacgctaa 3461530  T
Q  378 tgtatt 383  Q
    ||||||    
T  3461529 tgtatt 3461524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 19401921 - 19401979
Alignment:
Q  312 acttaacatgcgctagtgtattttgtacttatgttaagtcacgttgcatgacttgacat 370  Q
    ||||||| |||||||||||||||||||| || |||||||||||| || |||||| ||||    
T  19401921 acttaacttgcgctagtgtattttgtacctaagttaagtcacgtagcgtgacttaacat 19401979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 40017313 - 40017237
Alignment:
Q  312 acttaacatgcgctagtgtattttgt-acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatga 387  Q
    |||||| || |||||||||||||| | || || |||||||||||| || |||||| || ||||||||||||||||||    
T  40017313 acttaaaattcgctagtgtatttttttacctaagttaagtcacgtagcgtgacttaacttgcgctagtgtattatga 40017237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 1974273 - 1974360
Alignment:
Q  312 acttaacatgcgctagtgtattttgtact-tatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||||||||||||||||||||  | || |||||||||||| |  |||||| |  |||||||||||||| ||| ||||| ||||    
T  1974273 acttaacatgcgctagtgtattttgttgtctaagttaagtcacgtagtgtgacttaagttgcgctagtgtattctgagcgtgagttaa 1974360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 3461545 - 3461457
Alignment:
Q  312 acttaacatgcgctagtgtattttgt--acttatgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaacgtgacttaa 398  Q
    ||||||||| ||||| |||||||| |  || || |||||||||||| || |||||| || |||| ||||||||| ||||||||| ||||    
T  3461545 acttaacatacgctaatgtattttttttacctaagttaagtcacgtagcgtgacttaacttgcgttagtgtattctgaacgtgagttaa 3461457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 389
Target Start/End: Original strand, 69720 - 69866
Alignment:
Q  243 aagaattctcctctttacccaaatcg-tttcgtttattcctaaagtaaaagtctaaaatggccttgcgcaacttaacatgcgctagtgtattttgtactt 341  Q
    ||||||| | |||||||| ||||| | ||||| | ||| | |||||||||||| |||||| |||| | ||  ||||||| || ||||||||| |||||||    
T  69720 aagaattttgctctttactcaaattggtttcgctcattaccaaagtaaaagtccaaaatg-ccttacacatgttaacatacgttagtgtattatgtactt 69818  T
Q  342 atgttaagtcacgttgcatgacttgacatgcgctagtgtattatgaac 389  Q
    ||||||| ||| | | | ||||||||||||||| |||||||| |||||    
T  69819 atgttaaatcatgctacgtgacttgacatgcgcaagtgtattttgaac 69866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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