View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_high_12 (Length: 369)
Name: NF19756_high_12
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 27814640 - 27814398
Alignment:
| Q |
12 |
acagagccagccagtagatcttgttgggggttcaacctcatattcatcttattgatatggttttgcaattctggaacacatttacacttctctttgaaga |
111 |
Q |
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| T |
27814640 |
acagaaccagccagtagatcttgttgggggttcaaactcatattcttcttattgatatggttttgcaattttggaacatatttacacttttctttgaaga |
27814541 |
T |
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| Q |
112 |
ataaaacttcattttatgatatcaagttgccaaatcaaggtgatggataataagattacccatatgagaaaaagcagagctttgtaggaatagtgtagtg |
211 |
Q |
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| T |
27814540 |
ataaaatttcattttatgatatcaagttgccaaatcaaggtgatggataataagattacccatatgagaaaaaacagagctttgtaggaatagtgtagtg |
27814441 |
T |
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| Q |
212 |
ggaagaagaaggaagggtgagcttgaagataaatgaaatcgaa |
254 |
Q |
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| T |
27814440 |
ggaagaagaaggaagggtgagcttgaagataaatgaaatcgaa |
27814398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 336
Target Start/End: Complemental strand, 27814379 - 27814350
Alignment:
| Q |
307 |
agcacaagagaaagcacgtggtagatagga |
336 |
Q |
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| T |
27814379 |
agcacaagagaaagcacgtggtagatagga |
27814350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 20196031 - 20196218
Alignment:
| Q |
12 |
acagagccagccagtagatcttgttggg-ggttcaacctcatattcatcttattgatatggttttgcaattctggaacacatttacacttctctttgaag |
110 |
Q |
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| T |
20196031 |
acagagccagcccctagagtttgttgggaggttcaacctcatattcttcttattgatatggttttgcaattctggaacacatttacacttctctttgaag |
20196130 |
T |
|
| Q |
111 |
aataaaacttcattttatgatatcaagttgccaaatcaaggtgatggataataagattacccatatgagaaaaagcagagctttgtag |
198 |
Q |
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| T |
20196131 |
aataaaacttcattttgtgatatcaagttgccaaatcaaggtgaaggataataagattacccatatgagaaaaaagagagctttgtag |
20196218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 36379322 - 36379213
Alignment:
| Q |
12 |
acagagccagccagtagatcttgttgggg-gttcaacctcatattcatcttattgatatggttttgcaattctggaacacatttacacttctctttgaag |
110 |
Q |
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|||||||||| ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36379322 |
acagagccagtcagtagagtttgttggtacgttcaacctcatattcttcttattaatatggttttgcaattctggaacacatttacacttctctttgaag |
36379223 |
T |
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| Q |
111 |
aataaaactt |
120 |
Q |
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|||||||||| |
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| T |
36379222 |
aataaaactt |
36379213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 23889352 - 23889435
Alignment:
| Q |
12 |
acagagccagccagtagatcttgttgggg-gttcaacctcatattcatcttattgatatggttttgcaattctggaacacattt |
94 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
23889352 |
acagagccagccagtagagtttgttggtacgttcaacctcatattcttcttattaatatggttttgcaattctggaacacattt |
23889435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 23901565 - 23901648
Alignment:
| Q |
12 |
acagagccagccagtagatcttgttgggg-gttcaacctcatattcatcttattgatatggttttgcaattctggaacacattt |
94 |
Q |
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| T |
23901565 |
acagagccagccagtagagtttgttggtacgttcaacctcatattcttcttattaatatggttttgcaattctggaacacattt |
23901648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 38058398 - 38058433
Alignment:
| Q |
149 |
aggtgatggataataagattacccatatgagaaaaa |
184 |
Q |
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| T |
38058398 |
aggtgatggatgataagattacccatatgagaaaaa |
38058433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 39205074 - 39204996
Alignment:
| Q |
42 |
ttcaacctcatattcatcttattgatatggttttgcaattctggaacacatttacacttctctttgaagaataaaactt |
120 |
Q |
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| T |
39205074 |
ttcaacctcatattcttcttattaatatggttttgcagttctggaacacatttacatttgtcttcgaagaataaaactt |
39204996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 35942658 - 35942708
Alignment:
| Q |
149 |
aggtgatggataataagattacccatatgagaaaaagc-agagctttgtag |
198 |
Q |
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||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
35942658 |
aggtgatggatgataagattacccatatgagaaaaaacgagagctttgtag |
35942708 |
T |
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