View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_high_2 (Length: 607)

Name: NF19756_high_2
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_high_2
NF19756_high_2
[»] chr2 (6 HSPs)
chr2 (11-453)||(16374653-16375099)
chr2 (11-361)||(30614713-30615065)
chr2 (503-586)||(16375098-16375181)
chr2 (212-350)||(18370599-18370738)
chr2 (306-350)||(16594356-16594400)
chr2 (129-176)||(27877446-27877493)
[»] chr3 (4 HSPs)
chr3 (19-357)||(8362994-8363334)
chr3 (215-358)||(17521898-17522042)
chr3 (128-176)||(11533572-11533620)
chr3 (292-350)||(17350303-17350360)
[»] chr1 (3 HSPs)
chr1 (70-347)||(18645246-18645528)
chr1 (236-361)||(42377470-42377594)
chr1 (29-85)||(42378311-42378367)
[»] chr7 (1 HSPs)
chr7 (210-347)||(11454265-11454403)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Original strand, 16374653 - 16375099
Alignment:
Q  11 cagagaataaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagg 110  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  16374653 cagagaataaatttgatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaagccatgaatcaaatcaaattggcataaacgtcaag 16374752  T
Q  111 gaccaacaccagagaataaaaatgat---acgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaaacatt-cgcc 206  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  || ||||    
T  16374753 gaccaacaccagagaataaaaatgatcatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttgccacacaaaaagtttcgcc 16374852  T
Q  207 atgaaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaat 306  Q
    | |||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16374853 acgaaatgaaacttaacacacaagacactttgaagaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaacaataaat 16374952  T
Q  307 atcatcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcatcagagacatactagtatagtaagtac 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  16374953 atcatcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatactagggtatggacaaatttcctcatagacatactagtatagtaagtac 16375052  T
Q  407 aaatttaatgatatccaatcaactgactgagatcagccacacattgt 453  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  16375053 aaatttaatgatatccaatcaactgactgagatcagccacaccttgt 16375099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 30615065 - 30614713
Alignment:
Q  11 cagagaataaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagg 110  Q
    |||||| ||||||| ||||||||| |||| |||||| |||||| | |||||||| |||||||||||  |||||||||||||||||| ||| |||  || |    
T  30615065 cagagagtaaacttgatacgattcaacaatttgtgaatcgatttaagcatgatatgaatcaagaagtaatgaatcaaatcaaattgacatgaacaacaag 30614966  T
Q  111 gaccaacaccagagaataaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaaa-cattcgccatg 209  Q
    | |||| |||| | ||||| ||| |||| ||||||||||| |||||| ||||||| ||||||||||  |||||||||  | |||||||   || |  |      
T  30614965 ggccaagaccatataataagaataatacaattcaagctatattgaatcgaatcaaggccttagaaagaaaaggttttgtcacacaaaaggttttgttaca 30614866  T
Q  210 aaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattat-aaagaaacaataaatat 308  Q
    ||||||||||||||| |||||||||||  || |||| ||| | |||  |||||||||||||||||||||   |||||||  | |||| ||| ||||| ||    
T  30614865 aaatgaaacttgacacacaaaacacttcaaagaaccgtaagagcatgtattgctaggtgctttaacatgtgttaaacatcgtaaaaggaaccataaacat 30614766  T
Q  309 catcaaattatctaacatcctaatcaaacatcatcaaaacaagaactatacta 361  Q
    |||||||||||||| |||||||||||||||| | | |||||||||||||||||    
T  30614765 catcaaattatctagcatcctaatcaaacattagcgaaacaagaactatacta 30614713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 503 - 586
Target Start/End: Original strand, 16375098 - 16375181
Alignment:
Q  503 gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgact 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16375098 gtgctataacaaccttagattctagcaatgggctactgcattgcccataactcaccctctcagtccttgcatgacgtgctgact 16375181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 18370738 - 18370599
Alignment:
Q  212 atgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaaga-aacaataaatatca 310  Q
    ||||||||||| | |||  |||||||||| |||||||||| ||| |||||||||||||||||||||    ||| ||| ||||||| ||||||||| ||||    
T  18370738 atgaaacttgaaacacacgacactttgaagaaccctaaaatcatggattgctaggtgctttaacatatggtaatcatcataaagagaacaataaacatca 18370639  T
Q  311 tcaaattatctaacatcctaatcaaacatcatcaaaacaa 350  Q
    ||||  || ||| || ||||||||||||||||||| ||||    
T  18370638 tcaatatacctagcaacctaatcaaacatcatcaatacaa 18370599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 16594356 - 16594400
Alignment:
Q  306 tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16594356 tatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 16594400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 27877493 - 27877446
Alignment:
Q  129 aaaatgatacgattcaagctattttgaattgaatcaaagccttagaaa 176  Q
    ||||||||||||||||| | ||||||||| ||||||||| ||||||||    
T  27877493 aaaatgatacgattcaaacaattttgaatcgaatcaaaggcttagaaa 27877446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 8363334 - 8362994
Alignment:
Q  19 aaacttcatacgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatcaaatcaaattggcataaacgtcagggaccaaca 118  Q
    |||||| ||||||||| |||  |||||| || |||||||||||||| |||||||||||  ||||||| |||||||||  ||| | |  || || |||| |    
T  8363334 aaacttgatacgattcaacattttgtgaatctattcaggcatgatacgaatcaagaagtaatgaatcgaatcaaatttacatgaccaacaagggccaaga 8363235  T
Q  119 ccagagaataaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaattaaaggttttaccgcacaaa-acattcgccatgaaatgaaa 217  Q
    ||||||||||| ||| |||| | |||||  | ||||||||||||||| | |||||||||| |||||||| || |||||| |  || ||||| |||| |||    
T  8363234 ccagagaataagaataatactactcaagaaaatttgaattgaatcaagggcttagaaattgaaggttttgccacacaaatagttttgccataaaataaaa 8363135  T
Q  218 cttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatatcatcaaat 316  Q
    ||||||| |||| |||||||||  |||||||| |  || ||||||||||||||||||||||   |||| |||||||| ||||||||||| |||| |||||    
T  8363134 cttgacacacaagacactttgaggaaccctaagagtatggattgctaggtgctttaacatgtgataaatattataaaagaaacaataaacatcaccaaat 8363035  T
Q  317 tatctaacatcctaatcaaacatcatcaaaacaagaactat 357  Q
    |||||| |||| ||||||||||||||||||| |||||||||    
T  8363034 tatctagcatcgtaatcaaacatcatcaaaataagaactat 8362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 17522042 - 17521898
Alignment:
Q  215 aaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattata-aagaaacaataaatatcatca 313  Q
    |||||||||| |||| ||||||||| ||||||||| | ||| |||||||| ||  |||||||||  ||||||| |||| ||||||||||| | |||||||    
T  17522042 aaacttgacacacaagacactttgagaaaccctaagatcatggattgctaagtcttttaacatgtgctaaacaatatagaagaaacaatagacatcatca 17521943  T
Q  314 aattatctaacatcctaatcaaacatcatcaaaacaagaactata 358  Q
    | |||||||||| || ||||||||||||| ||||||||| |||||    
T  17521942 atttatctaacaacccaatcaaacatcataaaaacaagagctata 17521898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 11533620 - 11533572
Alignment:
Q  128 aaaaatgatacgattcaagctattttgaattgaatcaaagccttagaaa 176  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  11533620 aaaaatgatacgattcaaactattttgaatcgaatcaaaggcttagaaa 11533572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 17350303 - 17350360
Alignment:
Q  292 aaagaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaacaa 350  Q
    |||| ||||||||| ||||||||| |||||| || ||||||||||||||||||||||||    
T  17350303 aaaggaacaataaa-atcatcaaaatatctagcagcctaatcaaacatcatcaaaacaa 17350360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 70 - 347
Target Start/End: Original strand, 18645246 - 18645528
Alignment:
Q  70 caagaaggcatgaatcaaatcaaattggcataaacgtcagggaccaaca---ccagagaataaaaatgatacgattcaagctattttgaattgaatcaaa 166  Q
    |||||||  |||||||||||||||||| ||| ||| |||  | |||| |   ||||||||||||||||| | ||||||||||| ||||||| |||||||     
T  18645246 caagaagtaatgaatcaaatcaaattgacatgaacatcaaaggccaagaagaccagagaataaaaatgacatgattcaagctaatttgaatcgaatcaag 18645345  T
Q  167 gccttagaaattaaaggttttaccgcacaaaacattc-gccatgaaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctag 265  Q
     |||||||||||||||||||| || |||||||  ||  ||||  |||| |||||||||| |||| ||||||||||  ||||||| | ||| | |||||||    
T  18645346 accttagaaattaaaggttttgccacacaaaaagttttgccacaaaataaaacttgacacacaagacactttgaaggaccctaagagcatgggttgctag 18645445  T
Q  266 gtgctttaacatgcactaaacattataaa-gaaacaataaatatcatcaaattatctaacatcctaatcaaacatcatcaaaa 347  Q
     |||||||| | |  |||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  18645446 atgctttaagaagtgctaaacattataaaagaaacaataaacatcatcaaattatctagcatcctactcaaacatcatcaaaa 18645528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 42377594 - 42377470
Alignment:
Q  236 ttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaagaaa-caataaatatcatcaaattatctaacatcctaatca 334  Q
    ||||| |||||||| | ||||||||||||||||||||| ||||  |||| |||||||||   | ||||||| |||||||||||||||| |||||||||||    
T  42377594 ttgaagaaccctaagagcatagattgctaggtgcttta-catgtgctaa-cattataaaatgagcaataaacatcatcaaattatctagcatcctaatca 42377497  T
Q  335 aacatcatcaaaacaagaactatacta 361  Q
    ||||| |||||||||| ||||| ||||    
T  42377496 aacattatcaaaacaaaaactaaacta 42377470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 42378367 - 42378311
Alignment:
Q  29 cgattctacaacttgtgattcgattcaggcatgataagaatcaagaaggcatgaatc 85  Q
    |||||| |||||||||||||||||||||| |||||  ||||||| ||| ||||||||    
T  42378367 cgattcaacaacttgtgattcgattcaggtatgatgcgaatcaaaaagtcatgaatc 42378311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 11454403 - 11454265
Alignment:
Q  210 aaatgaaacttgacatacaaaacactttgaaaaaccctaaaaacatagattgctaggtgctttaacatgcactaaacattataaa-gaaacaataaatat 308  Q
    ||||||||||||||| ||||||||||||||| |||||||| || || ||||||||||| || ||| ||   ||||| |||||||| | ||||||||| ||    
T  11454403 aaatgaaacttgacacacaaaacactttgaagaaccctaagaatatggattgctaggtactataaaatatgctaaatattataaaaggaacaataaacat 11454304  T
Q  309 catcaaattatctaacatcctaatcaaacatcatcaaaa 347  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  11454303 catcaaattatctagcatcctaatcaaacatcataaaaa 11454265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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