View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_high_23 (Length: 316)

Name: NF19756_high_23
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_high_23
NF19756_high_23
[»] chr2 (1 HSPs)
chr2 (15-309)||(6175348-6175642)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 6175642 - 6175348
Alignment:
Q  15 aagtgtaccataccttattgtatatggaacaccttatagtaataggttttgacagtgcatgaaatcaacnnnnnnngaggaatgctttagaaaacatttg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||    
T  6175642 aagtgtaccataccttattgtatatggaacaccttatagtaataggttttgacagtgcatgaaatcaactttttttgaggaatgttttagaaaacatttg 6175543  T
Q  115 atatcatattcacatgaaagatgttgagtattctaacttttcttttttctttcatacaagtggtcattttatgtaatatacaacatgccggagataaaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6175542 atatcatattcacatgaaagatgttgagtattctaacttttcttttttctttcatacaagtggtcattttatgtaatatacaacatgccggagataaaat 6175443  T
Q  215 aggcttccatatgtgtatgtatccataaataagctgcggataaatagagcctttcaagttccatgcaaacaaaattctttaacttaattcctttg 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6175442 aggcttccatatgtgtatgtatccataaataagctgcgggtaaatagagcctttcaagttccctgcaaacaaaattctttaacttaattcctttg 6175348  T

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