View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_high_24 (Length: 308)

Name: NF19756_high_24
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_high_24
NF19756_high_24
[»] chr5 (19 HSPs)
chr5 (7-307)||(10604127-10604427)
chr5 (7-308)||(10601230-10601521)
chr5 (7-238)||(10611085-10611316)
chr5 (22-238)||(10717543-10717759)
chr5 (7-238)||(10580366-10580597)
chr5 (8-229)||(11049269-11049490)
chr5 (7-238)||(10564402-10564633)
chr5 (8-219)||(10217373-10217582)
chr5 (7-238)||(10741302-10741533)
chr5 (7-238)||(10747618-10747849)
chr5 (7-238)||(10763736-10763967)
chr5 (15-158)||(7192388-7192531)
chr5 (7-229)||(10589039-10589261)
chr5 (13-159)||(10558301-10558447)
chr5 (11-126)||(10652914-10653029)
chr5 (13-229)||(19606477-19606693)
chr5 (188-232)||(10550349-10550393)
chr5 (11-158)||(10660768-10660915)
chr5 (268-308)||(10763666-10763706)
[»] chr6 (6 HSPs)
chr6 (7-238)||(12931654-12931885)
chr6 (7-238)||(12957453-12957684)
chr6 (7-238)||(12906565-12906796)
chr6 (7-229)||(12948019-12948241)
chr6 (11-238)||(12898949-12899176)
chr6 (268-304)||(12899206-12899242)
[»] chr2 (2 HSPs)
chr2 (7-238)||(17924006-17924237)
chr2 (268-304)||(17923940-17923976)
[»] chr3 (1 HSPs)
chr3 (271-308)||(31467695-31467732)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 10604127 - 10604427
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10604127 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 10604226  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10604227 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattataagctttgtggaggaattt 10604326  T
Q  207 cacagttgcatctaccaccatgctctgtcaagcgttggaagcacacnnnnnnncattttcccaggttgatagcagtgatagttggtgtggtgtcttttct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  10604327 cacagttgcatctaccaccatgctctgtcaagcgttggaagcacacaaaaaatcattttcccaggttgatagcagtgatagttggtgtggtgtcttttct 10604426  T
Q  307 t 307  Q
    |    
T  10604427 t 10604427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 10601230 - 10601521
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||| | |||||| |||||||        
T  10601230 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctggtgttatggagaatatatctggtttagaatacttgaa---- 10601325  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
            |||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||| |||| ||||||||||||||||||||||||||||    
T  10601326 --------catgttggaaggagaggtgccaacaaacggtgtctttggaaatgcaaccagagtagcattgattggaaattacaagctttgtggaggaattt 10601417  T
Q  207 cacagttgcatctaccaccatgctctgtcaagcgttggaagcacac--nnnnnnncattttcccaggttgatagcagtgatagttggtgtggtgtctttt 304  Q
    ||||||||||||||||||||| || ||| |||||||||| ||||||         |||||||||| |||||| ||||||||||||||||||||||||| |    
T  10601418 cacagttgcatctaccaccatactatgtaaagcgttggacgcacacaaaaaaaatcattttcccaagttgatggcagtgatagttggtgtggtgtcttct 10601517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10611085 - 10611316
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||| ||||||||||| |||| |||||||||||||| ||||| |||||||  | ||||||||||||||||||    
T  10611085 tctcaaaggtcttcgatatttagacctttcaacaaatcaattgtctggatcaattcctgatgttatgcaggatatctcatgtttagaacacttgaatgtt 10611184  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||| ||||||||||||| || ||||| ||||||||| |||||||| || ||||||||||||| |||||  | |||||||||||||| ||||    
T  10611185 tcttttaacatgctggaaggtgaggtcccgacaaatggtgtctttagaaatgcatccaaagtagcaatgattggaaacaataagctttgtggaggtattt 10611284  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||| |||||||| |||||||| || |||||    
T  10611285 ctcagctgcatctagcaccatgccctatcaag 10611316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 10717759 - 10717543
Alignment:
Q  22 atatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcctttaacatgttg 121  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||||| ||||||| |||| | | |||||||||||||||||||| ||||||||||||    
T  10717759 atatttagacctttcaagaaatcaattgtacggaccaattcctgatgttatgcagaaaatctatggtttagaacacttgaatgtttcttttaacatgttg 10717660  T
Q  122 gaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcacagttgcatctac 221  Q
    ||||||||||| |||||| | ||||| |||  ||||||| ||||  |||  ||||| ||||| || |||||||||||||| |||||| ||||||||||||    
T  10717659 gaaggtgaggtaccaacagatggtgtttttgcaaatgcatcccatatagacatgattggaaactataagctttgtggaggtatttcagagttgcatctac 10717560  T
Q  222 caccatgctctgtcaag 238  Q
    || ||||| || |||||    
T  10717559 catcatgccctatcaag 10717543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10580366 - 10580597
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    ||||||||||||||  ||||||||||||||||||||| |||||| |||||||| ||| |||||| |||| ||||||||||  |||||| ||||  |||||    
T  10580366 tctcaaaggtctacggtatttagatatttcaagaaataaattgtttggaccaaatcccgatgttatgcaaaatatctctaatttagaatacttagatgtt 10580465  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||||||||| |||||| | ||||||||| |||||||||||  ||||||||| || |||||  | || |||||||| || ||||    
T  10580466 tcttttaacatgttggaaggtgaggtaccaacagatggtgtctttggaaatgcaaccagagtagcaataattggaaacaataaactttgtggtggtattt 10580565  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    || |||| ||||||||||||||| || |||||    
T  10580566 cagagttacatctaccaccatgccctttcaag 10580597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 11049490 - 11049269
Alignment:
Q  8 ctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgttt 107  Q
    |||||||||||   |||||||||  |||| ||||||||||| |||||| |||||||  ||||| | |||||||||| | | ||| |||||||||||||||    
T  11049490 ctcaaaggtcttttatatttagacctttctagaaatcaattttatggatcaattccaaatgttatacagaatatctttggtttaaaacacttgaatgttt 11049391  T
Q  108 cctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttc 207  Q
    | |||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||  | |||||||||||||| |||||    
T  11049390 cttttaacctgttggaaggcgaggtaccaacaaacggtgtctttggaaatgcaacccatgtagcaatgataggaaacaataagctttgtggaggtatttc 11049291  T
Q  208 acagttgcatctaccaccatgc 229  Q
    | | |||||||||||| |||||    
T  11049290 agatttgcatctaccatcatgc 11049269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10564402 - 10564633
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||||||||||||||| |||| |||||||||||||| |||| |||||||||   |||||| | |||||||||    
T  10564402 tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatctctgttttagaatatttgaatgtt 10564501  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||| || || |||  ||| ||||| ||| |||||| ||||||| ||| | |||| |||||  | |||||||||||||| ||||    
T  10564502 tcttttaacatgttggaaggagatgtaccattaaatggtgtatttggaaatgtaacccaaatagaagtgattggaaacaaaaagctttgtggaggtattt 10564601  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||| ||||||||||||||||| || |||||    
T  10564602 cccagctgcatctaccaccatgccctatcaag 10564633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 10217582 - 10217373
Alignment:
Q  8 ctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgttt 107  Q
    |||||||||||   |||||||||  |||| ||||||||||| |||||| |||||||  ||||  | |||||||||||| | ||| |||||||||||||||    
T  10217582 ctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctggtttaaaacacttgaatgttt 10217483  T
Q  108 cctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttc 207  Q
    | ||||||||||||||||| ||||| |||||||||||||||||| |||||| ||  || ||| ||||||| |||||  | |||||||||||||| |||||    
T  10217482 cttttaacatgttggaaggggaggtaccaacaaacggtgtctttggaaatgtaa--catgtaacaatgattggaaacaataagctttgtggaggtatttc 10217385  T
Q  208 acagttgcatct 219  Q
    | ||||||||||    
T  10217384 agagttgcatct 10217373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10741533 - 10741302
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| |||  ||||||  |||||||||||||||||| |||| |||||||||||||| || ||| ||||||| | || ||| |||||||||||    
T  10741533 tctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgaagagtatctctggtttggaatacttgaatgtt 10741434  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || |||||| | |||||||| ||||| |||||||| ||||| ||| |||||| | | ||| ||| | |||| |||||  | |||||||||||||| ||||    
T  10741433 tcttttaacttattggaaggagaggtaccaacaaatggtgtatttggaaatgtatctcaaatagaagtgattggaaacaaaaagctttgtggaggtattt 10741334  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    || |||||||||||||| ||||| || |||||    
T  10741333 cagagttgcatctaccatcatgccctatcaag 10741302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10747849 - 10747618
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||| ||||||| ||| |||||||  |||||||||||| ||||| |||  |||||||||||||| |||| |||||||||   |||||| | |||||||||    
T  10747849 tctcgaaggtcttcaacatttagacctttcaagaaatcgattgtctgggtcaattcctgatgttatgcaaaatatctctgttttagaatatttgaatgtt 10747750  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||||||||| |||| ||| ||||| ||| |||||| |||| |||||| | |||| |||||  | |||||||||||||| ||||    
T  10747749 tcttttaacatgttggaaggtgaggtaccaaaaaatggtgtatttggaaatgtaaccaaagtagaattgattggaaacaataagctttgtggaggtattt 10747650  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
      | | ||||| ||||||||||| || |||||    
T  10747649 tgctgctgcatttaccaccatgccctatcaag 10747618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10763967 - 10763736
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| |||  ||||||  |||||||||||||||||| |||| |||||||||||||| |||| ||||| |||   | |||| | |||||||||    
T  10763967 tctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatatctgtttaagaatatttgaatgtt 10763868  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||| || || |||||||| || || ||| |||||| | ||||| ||| | |||  |||||  | |||||||||||||| ||||    
T  10763867 tcttttaacatgttggaaggcgaagtaccaacaaatggcgtatttggaaatgtatcccaaatagaagtgactggaaacaagaagctttgtggaggtattt 10763768  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | | | | ||||||||| ||||| ||||||||    
T  10763767 cccggctacatctaccatcatgccctgtcaag 10763736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 7192388 - 7192531
Alignment:
Q  15 gtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcctttaa 114  Q
    |||| |||||||||||  | ||||||||||  |||||||||||||||||| ||||| | |||||||| ||    |||||||||||||||||||| || ||    
T  7192388 gtcttcaatatttagacctgtcaagaaatcggttgtatggaccaattcctaatgttctacagaatatatcagttttagaacacttgaatgtttctttcaa 7192487  T
Q  115 catgttggaaggtgaggtgccaacaaacggtgtctttcgaaatg 158  Q
    |||||||||||| ||||| |||||| | ||||||||| ||||||    
T  7192488 catgttggaaggcgaggtaccaacagaaggtgtctttggaaatg 7192531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 10589261 - 10589039
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| ||||||||||| || ||||||||||| |||| |||| ||||||||     ||||||||||||   |  | ||||| |||| |||||     
T  10589261 tctcaaaggtcttcaatatttagacatgtcaagaaatcagttgtctggatcaattcctacaagtttgcagaatattgttttcctagaatacttcaatgta 10589162  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || || |||||||||||||||||||| ||||  || |||||||||| |||||||| |    |||||||||| |||||  | ||||||||||||||| |||    
T  10589161 tctttcaacatgttggaaggtgaggttccaatgaaaggtgtctttcaaaatgcaagcaggttagcaatgattggaaacaataagctttgtggaggagttt 10589062  T
Q  207 cacagttgcatctaccaccatgc 229  Q
     | || |||||||||| ||||||    
T  10589061 tagagctgcatctaccgccatgc 10589039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 10558301 - 10558447
Alignment:
Q  13 aggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttccttt 112  Q
    |||||| | ||||||||| || |||||||||||||||| |||| |||||||| |  || |||| ||||| ||| | |||||||||||||| ||||| |||    
T  10558301 aggtcttcgatatttagacatgtcaagaaatcaattgtctggatcaattcctaacattctgcaaaatatttctcgtttagaacacttgaacgtttcattt 10558400  T
Q  113 aacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgc 159  Q
    ||||||||||| || ||||| |||| | | ||||||||| |||||||    
T  10558401 aacatgttggatggagaggttccaaaagaaggtgtctttagaaatgc 10558447  T

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Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 10653029 - 10652914
Alignment:
Q  11 aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct 110  Q
    |||||||| |||||||||||  | ||||||||||  |||||||||||||||||  ||||| | || | ||| ||    |||||||||||||||||||| |    
T  10653029 aaaggtcttcaatatttagacttgtcaagaaatcggttgtatggaccaattccaaatgttctacaaagtatatcagttttagaacacttgaatgtttctt 10652930  T
Q  111 ttaacatgttggaagg 126  Q
    | ||||||||||||||    
T  10652929 tcaacatgttggaagg 10652914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 19606693 - 19606477
Alignment:
Q  13 aggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttccttt 112  Q
    |||||| | |||||||||  | ||||||||||  |||  |||| ||||||||  |||| |||| ||||| |||   |||||| ||||||||||||| |||    
T  19606693 aggtcttcgatatttagacctatcaagaaatcggttgactggatcaattcctagtgttctgcaaaatatttctgttttagaatacttgaatgtttctttt 19606594  T
Q  113 aacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcacagt 212  Q
    ||||||||||| || ||||| || | | | ||||||||| ||||||| |    | ||||| ||| ||| ||  | |||||||||||||| ||||| ||      
T  19606593 aacatgttggatggagaggttcctaaagaaggtgtctttggaaatgctagtgcattagcagtgaccgggaacaataagctttgtggaggtatttcgcatc 19606494  T
Q  213 tgcatctaccaccatgc 229  Q
    |||| ||||||||||||    
T  19606493 tgcacctaccaccatgc 19606477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 10550349 - 10550393
Alignment:
Q  188 aagctttgtggaggaatttcacagttgcatctaccaccatgctct 232  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||    
T  10550349 aagctttgtggaggaattttagagttgcatctaccgccatgctct 10550393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 10660915 - 10660768
Alignment:
Q  11 aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct 110  Q
    |||||||| |||||| ||||  | ||| |||||| ||||| |||||| |||||  ||||| | |||||||| ||    ||| ||||||||||||| || |    
T  10660915 aaaggtcttcaatatctagacttgtcaggaaatcgattgtctggaccgattccaaatgttctacagaatatatcagttttaaaacacttgaatgtatctt 10660816  T
Q  111 ttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatg 158  Q
    | |||||||||||||| ||||| ||||   | ||||||||| ||||||    
T  10660815 tcaacatgttggaaggcgaggtaccaatggaaggtgtctttggaaatg 10660768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 10763706 - 10763666
Alignment:
Q  268 caggttgatagcagtgatagttggtgtggtgtcttttcttc 308  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  10763706 caggttgatagcagtgatagttagcgtggtttcttttcttc 10763666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12931654 - 12931885
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||||||||||||||| |||| |||||||||||| | |||| |||||||||   |||||| | |||||||||    
T  12931654 tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagaatatttgaatgtt 12931753  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||| ||||| || ||||| ||||| ||| |||||||||||||| |||   |||| |||||  | |||||||||||||| ||||    
T  12931754 tcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagacttgattggaaacaaaaagctttgtggaggtattt 12931853  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||  ||||||||||||||||| || |||||    
T  12931854 cccacctgcatctaccaccatgccctatcaag 12931885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12957453 - 12957684
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||| |||||||||||| | |||| |||||||||   |||||| | |||||||||    
T  12957453 tctcaaaggtcttcaatatttagacgtttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagaatatttgaatgtt 12957552  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || |||||||| |||||||| ||||| || ||||| ||||| ||| ||||||||| |||| ||| | |||| |||||  | |||||||||||||| ||||    
T  12957553 tcttttaacatattggaaggagaggtaccgacaaatggtgtatttggaaatgcaagccaaatagaagtgattggaaacaaaaagctttgtggaggtattt 12957652  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||  ||||||||||||||||| || |||||    
T  12957653 cccatctgcatctaccaccatgccctatcaag 12957684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12906565 - 12906796
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||||||||||||||| |||| |||||||||||| | |||| ||||||||    || ||| | || ||||||    
T  12906565 tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatattttaatgtt 12906664  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||| ||||| || ||||| ||| | ||| ||||| |||||||| ||| | |||| |||||  | |||||||||||||| ||||    
T  12906665 tcttttaacatgttggaaggagaggtaccgacaaaaggtttatttggaaattcaacccaaatagaattgattggaaacaaaaagctttgtggaggcattt 12906764  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||  |||||||||||||||||||| |||||    
T  12906765 cccacctgcatctaccaccatgctctatcaag 12906796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 12948019 - 12948241
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||||||||||||||| |||| |||||||||||| | |||| |||||||||   |||||  | |||||||||    
T  12948019 tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagagtatttgaatgtt 12948118  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||| ||| ||| | || ||||| ||||| ||| |||||||||||||| ||| | |||| |||||  | ||||| |||||||| ||||    
T  12948119 tcttttaacatgttggtaggagagataccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctatgtggaggtattt 12948218  T
Q  207 cacagttgcatctaccaccatgc 229  Q
    | ||  |||||||||||||||||    
T  12948219 cccacctgcatctaccaccatgc 12948241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 12898949 - 12899176
Alignment:
Q  11 aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct 110  Q
    |||||||| |||||||||||  |||||||||||||||||| |||| |||||||||||| | |||| ||||||||    || ||| | || |||||||| |    
T  12898949 aaaggtcttcaatatttagacttttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatattttaatgtttctt 12899048  T
Q  111 ttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcaca 210  Q
    |||||||||||||||| ||||| || ||||| ||||| ||| |||||||||| ||| ||| | |||| |||||  | ||||| |||||||| ||||| ||    
T  12899049 ttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacgcaaatagaagtgattggaaacaaaaagctctgtggaggtatttccca 12899148  T
Q  211 gttgcatctaccaccatgctctgtcaag 238  Q
      ||||||||||||| ||| || |||||    
T  12899149 cctgcatctaccaccgtgccctatcaag 12899176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 12899206 - 12899242
Alignment:
Q  268 caggttgatagcagtgatagttggtgtggtgtctttt 304  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  12899206 caggttgatagcagtgatagttagtgtggtttctttt 12899242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 17924237 - 17924006
Alignment:
Q  7 tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt 106  Q
    |||||||||||| | |||||||||  |||||||||||||||||| |||| |||||||||||| | |||| ||||||||    || ||| | |||||||||    
T  17924237 tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatatttgaatgtt 17924138  T
Q  107 tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt 206  Q
    || ||||||||||||||||| ||||| || ||||| ||||| ||| |||||||||||||| ||| | |||| |||||  | |||||||||||||| ||||    
T  17924137 tcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtattt 17924038  T
Q  207 cacagttgcatctaccaccatgctctgtcaag 238  Q
    | ||  ||||||||||||||||| || |||||    
T  17924037 cccacctgcatctaccaccatgccctatcaag 17924006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 17923976 - 17923940
Alignment:
Q  268 caggttgatagcagtgatagttggtgtggtgtctttt 304  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  17923976 caggttgatagcagtgatagttagtgtggtttctttt 17923940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 31467732 - 31467695
Alignment:
Q  271 gttgatagcagtgatagttggtgtggtgtcttttcttc 308  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  31467732 gttgatagcagtgatagttagtgtggtttcttttcttc 31467695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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