View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_high_28 (Length: 281)
Name: NF19756_high_28
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 16298102 - 16298349
Alignment:
| Q |
15 |
aaaatcaaacacagctgcgtaataaacaaaaacaataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298102 |
aaaatcaaacacagctgcgtaataaacaaaaataataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
16298201 |
T |
|
| Q |
115 |
aaaaagtcgcaacattatgtgataacaaggttggtgtcgtccaaaaaagcattcctatcccacctctaaattatatgcataaggcaacaacactacacaa |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16298202 |
aaaaagtcacaacattatgtgataacaaggttggtgtcgtccaaaaaaacattcctatcccacctctaaattatatgc---aggcaacaacactacacaa |
16298298 |
T |
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| Q |
215 |
taaaatagatatgttaggatttcaacataagtaaatattattagattaaaa |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298299 |
taaaatagatatgttaggatttcaacataagtaaatattattagattaaaa |
16298349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 16305804 - 16306060
Alignment:
| Q |
15 |
aaaatcaaacacagctgcgtaataaacaaaaacaataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
114 |
Q |
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|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16305804 |
aaaatcaaacacagttgtgtaataaacaaaaataataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
16305903 |
T |
|
| Q |
115 |
aaaaagtcgcaacattatgtgataacaaggttggtgtcgtccaaaaaagcattcctatcccacctctaaattatatgcataaggcaacaacactacacaa |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16305904 |
aaaaagtcacaacattatgtgataacaaggttggtgtcgtccaaaaaaacattcatatcccacctttaaattatatgcataaggcaacaacactacacaa |
16306003 |
T |
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| Q |
215 |
taaa------atagatatgttaggatttcaacataagtaaatattattagattaaaa |
265 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16306004 |
taaaatagatatagatatgttaggatttcaacataagtaaatattattagattaaaa |
16306060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 22895589 - 22895845
Alignment:
| Q |
15 |
aaaatcaaacacagctgcgtaataaacaaaaacaataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
114 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895589 |
aaaatcaaacacagatgagtaataaacaaaaaaaataaattgagattttatacctccaaagctgctcataatcacaaaagttatgctgctacttatgctc |
22895688 |
T |
|
| Q |
115 |
aaaaagtcgcaacattatgtgataacaaggttggtgtcgtccaaaaaagcattcctatcccacctctaaattatatgcataaggcaacaacactacacaa |
214 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22895689 |
aaaaagtcacaacattatgtgataacaaggttggtgtcgtccaaaaaaacattcatatcccacctttaaattatatgcataaggcaacaacactacacaa |
22895788 |
T |
|
| Q |
215 |
taaa------atagatatgttaggatttcaacataagtaaatattattagattaaaa |
265 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895789 |
taaaatagatatagatatgttaggatttcaacataagtaaatattattagattaaaa |
22895845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 15976511 - 15976599
Alignment:
| Q |
178 |
ctctaaattatatgcataaggcaacaacactacacaataaaata-gatatgttaggatttcaacataagtaaatattattagattaaaa |
265 |
Q |
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||||||||||||||||||||| ||||| | | |||||||||||| | |||||||| ||||||||||||||| ||||||||||||||| |
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| T |
15976511 |
ctctaaattatatgcataaggaaacaagattgcacaataaaataggccatgttaggctttcaacataagtaacgattattagattaaaa |
15976599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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