View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_high_30 (Length: 266)
Name: NF19756_high_30
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 3338177 - 3338426
Alignment:
| Q |
1 |
aagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgatattaatcacaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3338177 |
aagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgatattaatcacaagt |
3338276 |
T |
|
| Q |
101 |
cattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc--nnnnnnnnnnnntatgc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3338277 |
cattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggcctctctctctctcttatgc |
3338376 |
T |
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| Q |
199 |
tccatccaatgcactcatggtggatcccacaa-ccctcctcctcttcatt |
247 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
3338377 |
tccatccaatgcactcatggtggaccccacaacccctcctcctcttcatt |
3338426 |
T |
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