View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_high_33 (Length: 250)

Name: NF19756_high_33
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_high_33
NF19756_high_33
[»] chr2 (18 HSPs)
chr2 (11-250)||(13110287-13110526)
chr2 (139-248)||(4666213-4666323)
chr2 (137-250)||(11522073-11522185)
chr2 (125-209)||(42946656-42946741)
chr2 (140-234)||(14196370-14196461)
chr2 (125-220)||(38216438-38216534)
chr2 (137-250)||(16625696-16625809)
chr2 (135-196)||(6584765-6584826)
chr2 (162-250)||(36030894-36030983)
chr2 (139-196)||(44656696-44656753)
chr2 (139-226)||(9087613-9087701)
chr2 (156-250)||(29880859-29880954)
chr2 (151-212)||(25463674-25463736)
chr2 (137-209)||(9087397-9087470)
chr2 (139-215)||(13767496-13767572)
chr2 (137-250)||(27987745-27987856)
chr2 (137-250)||(28074278-28074389)
chr2 (148-224)||(43100124-43100200)
[»] chr4 (22 HSPs)
chr4 (91-235)||(28880020-28880166)
chr4 (137-215)||(27143254-27143333)
chr4 (139-221)||(46176589-46176672)
chr4 (137-227)||(49936578-49936669)
chr4 (137-250)||(40422963-40423078)
chr4 (137-215)||(46669871-46669950)
chr4 (137-196)||(48620365-48620424)
chr4 (137-209)||(21443098-21443171)
chr4 (125-228)||(37662707-37662811)
chr4 (89-196)||(47063709-47063817)
chr4 (125-207)||(18369761-18369844)
chr4 (125-207)||(36593079-36593162)
chr4 (137-196)||(52430521-52430580)
chr4 (125-215)||(56117946-56118037)
chr4 (141-196)||(16878777-16878834)
chr4 (137-227)||(30307445-30307535)
chr4 (139-196)||(32648950-32649007)
chr4 (139-215)||(41844513-41844590)
chr4 (139-196)||(52594572-52594629)
chr4 (139-191)||(34236476-34236528)
chr4 (127-215)||(42649888-42649979)
chr4 (125-215)||(56439299-56439388)
[»] chr3 (25 HSPs)
chr3 (147-235)||(42157724-42157813)
chr3 (126-250)||(46891451-46891576)
chr3 (117-249)||(4247172-4247306)
chr3 (131-196)||(38401865-38401930)
chr3 (140-228)||(48444584-48444673)
chr3 (137-250)||(3333940-3334054)
chr3 (137-215)||(13638502-13638581)
chr3 (125-222)||(21777209-21777305)
chr3 (137-215)||(11500177-11500257)
chr3 (139-250)||(32720973-32721084)
chr3 (125-191)||(23613120-23613186)
chr3 (141-221)||(44979477-44979558)
chr3 (138-209)||(19148244-19148316)
chr3 (137-212)||(52620764-52620840)
chr3 (137-215)||(7302160-7302239)
chr3 (127-190)||(44401141-44401204)
chr3 (137-250)||(35283163-35283277)
chr3 (137-191)||(40674183-40674237)
chr3 (137-249)||(1132827-1132940)
chr3 (147-196)||(2927930-2927979)
chr3 (139-196)||(39966824-39966881)
chr3 (137-190)||(53888563-53888616)
chr3 (156-211)||(9241580-9241636)
chr3 (137-201)||(27922037-27922101)
chr3 (147-222)||(42668130-42668206)
[»] chr1 (27 HSPs)
chr1 (137-250)||(43530189-43530303)
chr1 (123-191)||(6538020-6538088)
chr1 (129-222)||(32123533-32123624)
chr1 (137-250)||(49102866-49102977)
chr1 (137-249)||(35619406-35619519)
chr1 (137-228)||(43036236-43036328)
chr1 (172-250)||(6538098-6538177)
chr1 (125-188)||(51572303-51572366)
chr1 (137-250)||(25561209-25561323)
chr1 (141-194)||(19920970-19921023)
chr1 (137-249)||(34551980-34552093)
chr1 (160-196)||(48432724-48432760)
chr1 (125-176)||(29739163-29739214)
chr1 (137-215)||(30543289-30543368)
chr1 (137-235)||(33579329-33579428)
chr1 (139-228)||(24436845-24436935)
chr1 (173-234)||(40136131-40136193)
chr1 (137-191)||(45752188-45752242)
chr1 (158-235)||(52073364-52073442)
chr1 (137-213)||(19652223-19652300)
chr1 (139-215)||(23079852-23079929)
chr1 (141-197)||(6245070-6245126)
chr1 (152-196)||(36668595-36668639)
chr1 (137-228)||(41432675-41432767)
chr1 (139-191)||(44195924-44195976)
chr1 (139-191)||(44303788-44303840)
chr1 (163-250)||(50097716-50097804)
[»] chr7 (21 HSPs)
chr7 (137-235)||(33187753-33187852)
chr7 (137-248)||(38138007-38138119)
chr7 (137-249)||(14676306-14676419)
chr7 (168-227)||(31770246-31770306)
chr7 (137-196)||(1278014-1278073)
chr7 (139-249)||(44487227-44487338)
chr7 (137-190)||(12624326-12624379)
chr7 (158-250)||(20513405-20513498)
chr7 (140-250)||(46303332-46303438)
chr7 (153-196)||(12884694-12884737)
chr7 (156-222)||(13858417-13858484)
chr7 (125-215)||(17818350-17818441)
chr7 (161-196)||(45471863-45471898)
chr7 (147-235)||(4787908-4787998)
chr7 (157-250)||(22556595-22556689)
chr7 (138-215)||(42266933-42267011)
chr7 (125-190)||(21687497-21687562)
chr7 (139-196)||(22394230-22394287)
chr7 (139-215)||(38991399-38991476)
chr7 (137-228)||(13044223-13044315)
chr7 (137-228)||(45510418-45510510)
[»] chr6 (15 HSPs)
chr6 (137-215)||(2502292-2502371)
chr6 (137-250)||(8439287-8439400)
chr6 (139-228)||(22817254-22817344)
chr6 (87-215)||(29054592-29054722)
chr6 (137-235)||(4089303-4089402)
chr6 (139-213)||(6026249-6026324)
chr6 (137-235)||(13120328-13120427)
chr6 (173-250)||(33184278-33184356)
chr6 (156-235)||(33677118-33677195)
chr6 (158-215)||(33939049-33939107)
chr6 (137-249)||(26683393-26683505)
chr6 (183-250)||(6695418-6695486)
chr6 (137-228)||(19477332-19477424)
chr6 (137-208)||(20381799-20381871)
chr6 (137-224)||(26289627-26289715)
[»] chr8 (17 HSPs)
chr8 (137-250)||(13258562-13258676)
chr8 (137-250)||(1839711-1839825)
chr8 (155-235)||(32502927-32503007)
chr8 (139-187)||(2457830-2457878)
chr8 (137-235)||(10878691-10878787)
chr8 (137-235)||(35856436-35856535)
chr8 (137-196)||(41455335-41455394)
chr8 (131-196)||(11961467-11961532)
chr8 (138-206)||(28517196-28517264)
chr8 (137-196)||(32229-32288)
chr8 (137-196)||(16424214-16424273)
chr8 (137-215)||(27085424-27085503)
chr8 (137-215)||(40985000-40985079)
chr8 (137-224)||(10255513-10255602)
chr8 (159-235)||(13537440-13537517)
chr8 (159-235)||(13626988-13627065)
chr8 (139-215)||(43007776-43007853)
[»] chr5 (23 HSPs)
chr5 (131-249)||(31632907-31633023)
chr5 (137-250)||(4841600-4841714)
chr5 (137-215)||(7398707-7398785)
chr5 (89-249)||(19389720-19389882)
chr5 (131-215)||(1474942-1475027)
chr5 (137-209)||(1935039-1935112)
chr5 (137-249)||(17668026-17668139)
chr5 (139-215)||(26018819-26018896)
chr5 (137-228)||(37909067-37909158)
chr5 (137-215)||(6491260-6491339)
chr5 (137-235)||(9684697-9684796)
chr5 (125-208)||(29799701-29799785)
chr5 (137-235)||(3081238-3081337)
chr5 (195-250)||(15917527-15917582)
chr5 (137-215)||(25779571-25779650)
chr5 (89-221)||(13839480-13839613)
chr5 (148-190)||(19338524-19338566)
chr5 (137-215)||(35708689-35708767)
chr5 (126-196)||(43265237-43265307)
chr5 (137-225)||(6044609-6044698)
chr5 (137-190)||(15916959-15917012)
chr5 (86-190)||(2561118-2561222)
chr5 (156-215)||(28154785-28154845)
[»] scaffold0717 (1 HSPs)
scaffold0717 (139-196)||(1656-1713)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 13110287 - 13110526
Alignment:
Q  11 caaaggaaggaggaaagggaaataaaagaaaggatgatctcttaacttgaatatgaggtaatatcacatcaagaaggaggaactaaaaaattgtatcgaa 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13110287 caaaggaaggaggaaagggaaatgaaagaaaggatgatctcttaacttgaatatgaggtaacatcacatcaagaaggaggaactaaaaaattgtatcgaa 13110386  T
Q  111 tgaagattttagatgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcat 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13110387 tgaaggttttagatgtttagataaactcttcaaatctaatatatattgttatagtactctcaaaattgaaaatatattaatgataacatttatttatcat 13110486  T
Q  211 tctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13110487 tctctgcaaaaatactctatcaaaacctatgaaagatttc 13110526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 4666213 - 4666323
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 237  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||   |||||||||| ||||||      
T  4666213 ttcaaatttaatatatcttgttataatattcttaaaatttaaaatatattaatcataagcattaatttatcactctctaataaaatactctttcaaaaaa 4666312  T
Q  238 tatgaaagatt 248  Q
    |||||||||||    
T  4666313 tatgaaagatt 4666323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 11522185 - 11522073
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||||  | |||||| ||||||||  ||||  ||||||||||| ||||||    
T  11522185 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcttaaacattaatttatca--ctctaaaaaaatactctttcaaaa 11522088  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  11522087 aatgtgaaagatttc 11522073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 42946741 - 42946656
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatca 209  Q
    ||||| ||||| ||||||||| |||||||| |||||||| || ||| |||||| ||||||||||||| || |||||| ||||||||    
T  42946741 gtttatataaattcttcaaatttaatatatgttgttatactattcttaaaattaaaaatatattaatcataaacattaatttatca 42946656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 14196370 - 14196461
Alignment:
Q  140 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaa 234  Q
    ||||||| ||| ||| ||||||||||||||   ||||| ||| ||||||||| ||||||||  |||||||||||||| ||||| ||||| |||||    
T  14196370 tcaaatccaatctatgttgttataatactc---aaattaaaattatattaatcataacattcttttatcattctctgtaaaaacactctctcaaa 14196461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 38216534 - 38216438
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaa 220  Q
    ||||||||||  |||||||||  ||| ||| || |||||||||||| |||||| ||||||||||||| || |||||| || ||||||||||| ||||    
T  38216534 gtttagataatttcttcaaattcaatctatgtttttataatactctaaaaattaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 16625809 - 16625696
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| ||| ||||||||||| ||| || ||| ||||||||| ||| |||| ||||  |||||||||||||  ||||||||||| ||||||    
T  16625809 tcttcaaatttaatctatgttgttataatattcttaatattaaaaatatatgaatcataagcattggtttatcattctct-aaaaaatactctttcaaaa 16625711  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  16625710 aatgtgaaagatttc 16625696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 6584826 - 6584765
Alignment:
Q  135 actcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||| |||||| |||||||||||||||||||| | | |||||| ||||||||||||| ||||    
T  6584826 actcgtcaaatttaatatatattgttataatatttttaaaatttaaaatatattaatcataa 6584765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 36030894 - 36030983
Alignment:
Q  162 taatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||  ||||||||||| || |||  | |||||||||||    
T  36030894 taatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatactctttccaaaaatgtgaaagatttc 36030983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 44656753 - 44656696
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  44656753 ttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 44656696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 9087701 - 9087613
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatact 226  Q
    ||||||| ||||||||||||| |||||| | | |||||| ||||||||||||| || |||||| |||||||| ||| |  |||||||||    
T  9087701 ttcaaatttaatatatattgtcataatattattaaaattaaaaatatattaatcataaacattaatttatcactctttaaaaaaatact 9087613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 29880859 - 29880954
Alignment:
Q  156 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||||||||| | |||||||| ||||||||||||| |||| ||||  |||||||||||||  |||| | |||| |||||| |  |||||||||||    
T  29880859 ttgttataatattatcaaaattaaaaatatattaatcataagcattcgtttatcattctctaaaaaattgctctttcaaaaacagtgaaagatttc 29880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 25463736 - 25463674
Alignment:
Q  151 atatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattc 212  Q
    |||||||||||||||||||  |||||| ||| ||||||||| || || |||||||||||||||    
T  25463736 atatattgttataatactcgaaaaattaaaattatattaatcataaatatttatttatcattc 25463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 9087470 - 9087397
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 209  Q
    ||||||||| |||||||| |||| |||||| | | |||||| ||||||||||||| |||| |||| ||||||||    
T  9087470 tcttcaaatttaatatatgttgtcataatattattaaaattaaaaatatattaatcataagcattaatttatca 9087397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13767496 - 13767572
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 215  Q
    |||||||  ||| ||| ||||||||||| | | |||||| ||||||||||||| ||||   ||||||||||||||||    
T  13767496 ttcaaattcaatctatgttgttataatatttttaaaattaaaaatatattaatcataaacattatttatcattctct 13767572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 27987745 - 27987856
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| ||||||||   || |||| |||| |||||||| ||||| |||||| ||||| |||| |    
T  27987745 tcttcaaatttaatatatgttgatataatattcttaaaattaaaaatata---atcataagcattaatttatcactctctacaaaaacactctttcaaca 27987841  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  27987842 aatgtgaaagatttc 27987856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 28074278 - 28074389
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| ||||||||   || |||| |||| |||||||| ||||| |||||| ||||| |||| |    
T  28074278 tcttcaaatttaatatatgttgatataatattcttaaaattaaaaatata---atcataagcattaatttatcactctctacaaaaacactctttcaaca 28074374  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  28074375 aatgtgaaagatttc 28074389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 43100200 - 43100124
Alignment:
Q  148 aatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaata 224  Q
    ||||||| ||||||||||| ||| |||| | ||||||||||||| | || | | |||||||||||| | ||||||||    
T  43100200 aatatatgttgttataatattcttaaaagtaaaaatatattaatcacaaaactaatttatcattctttacaaaaata 43100124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 28880020 - 28880166
Alignment:
Q  91 aactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatatta 189  Q
    |||||||| ||||||| |||||| |||||| || | |||| || || ||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||    
T  28880020 aactaaaatattgtattgaatgaggattttggaggatttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatatta 28880119  T
Q  190 atgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    || || |||||| |||||||| |||||  ||||||||||| ||||||    
T  28880120 atcataaacattaatttatcactctctaaaaaaatactctttcaaaa 28880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 27143254 - 27143333
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  27143254 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 27143333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 46176589 - 46176672
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaa 221  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||| |||||| ||||  | |||||||||||||||| |||||    
T  46176589 ttcaaatctaatctatattgttataatactttcaaagttaaaaatacattaatcataagtacttatttatcattctctacaaaa 46176672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 49936578 - 49936669
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactc 227  Q
    |||||||||  ||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||  ||||||||||    
T  49936578 tcttcaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatactc 49936669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 40423078 - 40422963
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct-gcaaaaatactctatcaaa 234  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| || || ||| |||||||| |||||   ||||||||||| |||||    
T  40423078 tcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataaatattaatttatcactctctaaaaaaaatactctttcaaa 40422979  T
Q  235 acctatgaaagatttc 250  Q
    |  | |||||||||||    
T  40422978 aattgtgaaagatttc 40422963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 46669950 - 46669871
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||  ||||||||||||||    
T  46669950 tctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcataaatttatcattctct 46669871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 48620365 - 48620424
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  48620365 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 48620424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 21443098 - 21443171
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 209  Q
    ||||||||| ||||||||||| |||||||| | | |||||| ||||||||||||| |||| |||| ||||||||    
T  21443098 tcttcaaatttaatatatattattataatattttaaaaattaaaaatatattaataataagcattaatttatca 21443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 37662707 - 37662811
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaat 223  Q
    |||||||| || ||||||||| |||||||| || |||||||| | | |||||| ||||||||||||  |||| ||||  ||||||| |||||  ||||||    
T  37662707 gtttagatgaattcttcaaatttaatatatgttcttataatatttttaaaattaaaaatatattaaacataagcattattttatcactctctaaaaaaat 37662806  T
Q  224 actct 228  Q
    |||||    
T  37662807 actct 37662811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 47063709 - 47063817
Alignment:
Q  89 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 187  Q
    |||||||||||||||||| | | || ||||| ||| | ||||  | || ||||||||| |||||||| ||||||| ||| ||| |||||| |||||||||    
T  47063709 ggaactaaaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatttaatatatgttgttattatattcttaaaattaaaaatatat 47063808  T
Q  188 taatgataa 196  Q
    |||| ||||    
T  47063809 taatcataa 47063817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 18369761 - 18369844
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttat 207  Q
    ||||||||||| |||| ||||||| | ||| |||||| |||||| | ||| || ||||||||||||| || |||||||||||||    
T  18369761 gtttagataaattctttaaatctattttatgttgttacaatacttttaaagttaaaaatatattaataataaacatttatttat 18369844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 36593162 - 36593079
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttat 207  Q
    ||||||||||| |||| ||||||| | ||| |||||| |||||| | ||| || ||||||||||||| || |||||||||||||    
T  36593162 gtttagataaattctttaaatctattttatgttgttacaatacttttaaagttaaaaatatattaataataaacatttatttat 36593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 52430580 - 52430521
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||||||| ||||||||||| | | |||||| ||||||||||||| ||||    
T  52430580 tcttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataa 52430521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 56117946 - 56118037
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||| ||||| |||| |||| ||| |||| ||||||||||| ||| |||||  ||||||||| ||| |||| |||| ||||||||||||||    
T  56117946 gtttacataaattctttaaatttaacatatgttgttataatattcttaaaataaaaaatatatgaatcataatcattgatttatcattctct 56118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 16878777 - 16878834
Alignment:
Q  141 caaatctaatatatattgttataatact--ctcaaaattgaaaatatattaatgataa 196  Q
    |||||| |||||||||||||||||||||  | ||||||| ||||||||||||| ||||    
T  16878777 caaatccaatatatattgttataatactcacgcaaaattaaaaatatattaatcataa 16878834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 30307445 - 30307535
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactc 227  Q
    ||||||||| ||||||||  |||| ||||| ||| |||||| ||||||||||||| ||||   |||||| ||| |||||  ||||||||||    
T  30307445 tcttcaaatttaatatatgctgttgtaatattcttaaaattaaaaatatattaatcataagcattatttttcactctctaaaaaaatactc 30307535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 32649007 - 32648950
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  32649007 ttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 32648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 41844513 - 41844590
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    |||||||| ||| ||| ||||||||||| ||| |||||| ||| ||||||||| ||||  ||| ||||||||||||||    
T  41844513 ttcaaatccaatctatcttgttataatattcttaaaattaaaagtatattaatcataagtattaatttatcattctct 41844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 52594629 - 52594572
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||||||||||| ||| ||||||||||| ||| |||||| ||| ||||||||| ||||    
T  52594629 ttcaaatctaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 52594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 34236528 - 34236476
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    ||||||| |||| ||||| ||||||||| ||| |||||| |||||||||||||    
T  34236528 ttcaaatttaatctatatagttataatattcttaaaattaaaaatatattaat 34236476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 42649888 - 42649979
Alignment:
Q  127 ttagataaactcttcaaatctaatatatattgttataata--ctctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||| | |||||||| ||| ||  |||||||||||  ||||||||||| ||||||| ||||| || | |||| ||||||||||||||    
T  42649888 ttagataaaattttcaaatccaatctaagttgttataatactctctcaaaattaaaaatatgttaatcatgagcattcatttatcattctct 42649979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 56439388 - 56439299
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatga-taacatttatttatcattctct 215  Q
    ||||||||||| ||||||||| |||| | |  | |||||||| | | |||||| ||||||||||||||| ||||||| || |||||||||||    
T  56439388 gtttagataaattcttcaaatataatctgt--tattataatattataaaaattaaaaatatattaatgattaacattcatctatcattctct 56439299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 42157813 - 42157724
Alignment:
Q  147 taatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||| ||| |||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||  ||||| ||||||    
T  42157813 taatctatgttgttataatactctcaaaattaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcactctttcaaaa 42157724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 46891451 - 46891576
Alignment:
Q  126 tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaata 224  Q
    |||| ||||| ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||  ||| |||||||| |||||  |||||||    
T  46891451 tttatataaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagtattaatttatcagtctctaaaaaaata 46891550  T
Q  225 ctctatcaaaacctatgaaagatttc 250  Q
     ||| ||||||  |||||||||||||    
T  46891551 atctttcaaaaaatatgaaagatttc 46891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 4247172 - 4247306
Alignment:
Q  117 ttttagat-gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctc 214  Q
    |||||||| ||||| || || ||||||||| |||| ||| | ||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||||||    
T  4247172 ttttagatagtttacatgaattcttcaaatttaatctatttagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctc 4247271  T
Q  215 tgcaaaaatactctatcaaaacctatgaaagattt 249  Q
    |  |||| |||||| | ||||  ||||||||||||    
T  4247272 taaaaaattactctttaaaaaaatatgaaagattt 4247306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 38401930 - 38401865
Alignment:
Q  131 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||| ||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||| ||||    
T  38401930 ataaattcttcaaatttaatatatattattataatattctcaaaatttaaaatatattaattataa 38401865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 48444584 - 48444673
Alignment:
Q  140 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 228  Q
    |||||| |||||||||||||||||||| | | |||||| ||||||||||||| || |||||| |||||||| |||||  |||||||||||    
T  48444584 tcaaatttaatatatattgttataatatttttaaaattaaaaatatattaatcataaacattgatttatcactctctaaaaaaatactct 48444673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 3333940 - 3334054
Alignment:
Q  137 tcttcaaatctaatatatatt-gttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaa 234  Q
    ||||||||| |||||||| || ||||||||| ||| |||||||||||| ||||||| |||| |||| ||||||||||||||  |||||||||||  ||||    
T  3333940 tcttcaaatttaatatatttttgttataatattcttaaaattgaaaat-tattaatcataaacattaatttatcattctctaaaaaaatactcttccaaa 3334038  T
Q  235 acctatgaaagatttc 250  Q
    |  | |||||||||||    
T  3334039 aaatgtgaaagatttc 3334054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 13638502 - 13638581
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||| ||||| ||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||    
T  13638502 tcttcaaatttaatctatatagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctct 13638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 21777305 - 21777209
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 222  Q
    ||||||||||| |||||||||||||| ||  |||||||||||  | ||||||   ||||||||||||||| |||||| |||||||||||||| ||||||    
T  21777305 gtttagataaattcttcaaatctaatctaccttgttataata--cacaaaataagaaatatattaatgataaacattcatttatcattctctacaaaaa 21777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 11500177 - 11500257
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaatt-gaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||| |||||||| ||||||||||| ||| ||||||  ||||||||||||| || |||||| ||||||||||||||    
T  11500177 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaaatatattaattataaacattaatttatcattctct 11500257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 32721084 - 32720973
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 237  Q
    ||||||| |||||||| |||| |||||| | | |||||| ||||||||||||| |||| |||| |||||||| ||||| |||||||||||| |||| |      
T  32721084 ttcaaatttaatatatgttgtaataatatttt-aaaattaaaaatatattaatcataagcattaatttatcactctctacaaaaatactctttcaataaa 32720986  T
Q  238 tatgaaagatttc 250  Q
    | |||||||||||    
T  32720985 tgtgaaagatttc 32720973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 23613186 - 23613120
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    ||||||||||| | |||||||| ||| ||| || ||||||||||||||||||| ||||||| |||||    
T  23613186 gtttagataaattattcaaatccaatctatgttattataatactctcaaaatttaaaatattttaat 23613120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 44979477 - 44979558
Alignment:
Q  141 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaa 221  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||  |||||| |||| || | |||||||||||||| |||||    
T  44979477 caaatccaatatatgttgttataatactttcaaaattaaaaattcattaatcataagcaataatttatcattctctacaaaa 44979558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 19148244 - 19148316
Alignment:
Q  138 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 209  Q
    |||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||    
T  19148244 cttcaaatttaatttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatca 19148316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 52620840 - 52620764
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattc 212  Q
    ||||||||| |||||||| ||||||||||| | | |||||  ||||||||||||| |||| |||| |||||||||||    
T  52620840 tcttcaaatttaatatatgttgttataatatttttaaaataaaaaatatattaatcataagcattgatttatcattc 52620764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 7302160 - 7302239
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||| ||||| ||||||||| ||| |||| | ||||||||||||| ||||  ||| ||||||||||||||    
T  7302160 tcttcaaatttaatctatatagttataatattcttaaaactaaaaatatattaatcataagtattgatttatcattctct 7302239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 44401141 - 44401204
Alignment:
Q  127 ttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    |||| |||| |||||||||| |||| || ||||||||||| ||| |||||||| ||||||||||    
T  44401141 ttagttaaattcttcaaatccaatacatgttgttataataatcttaaaattgataatatattaa 44401204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 35283163 - 35283277
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||| || |||||||| ||||||||||| ||| |||||| ||||||||||| | ||||  ||| |||||||| |||    ||||||||||| ||||||    
T  35283163 tcttcatatttaatatatgttgttataatattcttaaaattaaaaatatattagtcataagaattaatttatcactctaaaaaaaaatactctttcaaaa 35283262  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  35283263 aatgtgaaagatttc 35283277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 40674183 - 40674237
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| |||||||||||||    
T  40674183 tctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaat 40674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 1132940 - 1132827
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||| |||| |||| ||| | ||| ||||| ||| |||||| ||||||||||||  || |||||| ||||||||||||||  |||| |||||| ||||||    
T  1132940 tctttaaatttaatctatgtagttgtaatattcttaaaattaaaaatatattaaccatgaacattaatttatcattctctaaaaaattactctttcaaaa 1132841  T
Q  236 cctatgaaagattt 249  Q
      | ||||||||||    
T  1132840 aatgtgaaagattt 1132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 2927930 - 2927979
Alignment:
Q  147 taatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  2927930 taatatatgttgttataatattcttaaaattaaaaatatattaatcataa 2927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 39966881 - 39966824
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||| |||||||| ||||||||||| | | |||||| ||||||||||||| ||||    
T  39966881 ttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaataataa 39966824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 53888563 - 53888616
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    ||||||||| |||||||| |||| |||||| ||| |||||| ||||||||||||    
T  53888563 tcttcaaatttaatatatgttgtaataatattcttaaaattaaaaatatattaa 53888616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 9241636 - 9241580
Alignment:
Q  156 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcatt 211  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||  ||||||||||||||    
T  9241636 ttgttataatattctcaagattaaaaatatattaatcataagtatttatttatcatt 9241580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 27922037 - 27922101
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacattt 201  Q
    ||||||||| |||| ||| ||||||||||| | | |||||| ||||||||||||| |||| ||||    
T  27922037 tcttcaaatttaatttatgttgttataatattttaaaaattaaaaatatattaatcataagattt 27922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 42668130 - 42668206
Alignment:
Q  147 taatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 222  Q
    |||| ||| ||||||||||| |||||||||| ||||| ||  |||||| |||||| |||||||||| ||| ||||||    
T  42668130 taatctatgttgttataatattctcaaaattaaaaatgtaccaatgataaacattcatttatcattatctacaaaaa 42668206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 43530303 - 43530189
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||||||||||||||| |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||| ||||| | ||||    
T  43530303 tcttcaaatttaatatatgttgttataatactcttaaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaacactcttttaaaa 43530204  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  43530203 aatgtgaaagatttc 43530189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 6538020 - 6538088
Alignment:
Q  123 atgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    ||||||| || |||||||||||| |||||||| ||||||||||| ||| |||||| |||||||||||||    
T  6538020 atgtttatatgaactcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaat 6538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 32123533 - 32123624
Alignment:
Q  129 agataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaa 222  Q
    ||||||| |||||||||||||| |||   ||||||||| |||||||||| | |||||||||||||| |||||| |||||||||||| | ||||||    
T  32123533 agataaattcttcaaatctaatttat---gttataatattctcaaaattaacaatatattaatgataaacattcatttatcattctttacaaaaa 32123624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 49102977 - 49102866
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaac 236  Q
    ||||||||| |||||||| ||| ||||||| ||| |||||| |||||||||| || |||| ||| ||||||||  ||||  ||||||||||| ||||||     
T  49102977 tcttcaaatttaatatatgttgctataatattcttaaaattaaaaatatattcatcataaaattaatttatca--ctctaaaaaaatactctttcaaaaa 49102880  T
Q  237 ctatgaaagatttc 250  Q
     | |||||||||||    
T  49102879 atgtgaaagatttc 49102866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 35619519 - 35619406
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||| ||||||||| || |||||| |||||||| |||||   |||||||| | | ||||    
T  35619519 tcttcaaatttaatatatgttgttataatattcttaaaattaaaagtatattaatcataaacattaatttatcactctctcataaaatactatttaaaaa 35619420  T
Q  236 cctatgaaagattt 249  Q
      ||||||||||||    
T  35619419 aatatgaaagattt 35619406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 43036328 - 43036236
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 228  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||   || |||||||| |||||| |||||||||||    
T  43036328 tcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataagtcttaatttatcactctctgaaaaaatactct 43036236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 6538098 - 6538177
Alignment:
Q  172 aaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||||||||| ||||||  |||||||||||||    
T  6538098 aaaattaaaaatatattaattataaacattgatttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttc 6538177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 51572303 - 51572366
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatatt 188  Q
    ||||||||||| |||| |||| |||| ||| ||| |||||||||||||||||| ||||||||||    
T  51572303 gtttagataaattctttaaatttaatctatgttgctataatactctcaaaattaaaaatatatt 51572366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 25561323 - 25561209
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| || ||||| || ||| |||||| ||||||||||||| |||| |||| | |||||| || ||  ||||||||||| ||||||    
T  25561323 tcttcaaatttaatatatgttattatattattcttaaaattaaaaatatattaatcataagcattaacttatcactcgctaaaaaaatactctttcaaaa 25561224  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  25561223 aatgtgaaagatttc 25561209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 19920970 - 19921023
Alignment:
Q  141 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat 194  Q
    |||||| |||||||||||||||||||||| ||||||| ||| || |||||||||    
T  19920970 caaatcaaatatatattgttataatactcacaaaattaaaagtacattaatgat 19921023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 34552093 - 34551980
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||| |||| |||| ||| ||||||||||| ||| |||||  ||||||||||||| |||| |||| |||||||| |||||  ||||||||  | ||||||    
T  34552093 tctttaaatttaatctatgttgttataatattcttaaaataaaaaatatattaatcataagcattgatttatcactctctagaaaaataccttttcaaaa 34551994  T
Q  236 cctatgaaagattt 249  Q
      ||||||||||||    
T  34551993 aatatgaaagattt 34551980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 48432724 - 48432760
Alignment:
Q  160 tataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||||||||||||||||||||||||||||||| ||||    
T  48432724 tataatactctcaaaattgaaaatatattaatcataa 48432760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 29739214 - 29739163
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaat 176  Q
    ||||||||||| |||||||||||||||||| |||||||| || | |||||||    
T  29739214 gtttagataaattcttcaaatctaatatatgttgttatagtattatcaaaat 29739163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 30543368 - 30543289
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||| ||||| ||||| ||| ||| |||||| ||||||||||||| ||||  ||| ||||||||||||||    
T  30543368 tcttcaaatttaatctatatagttatgatattcttaaaattaaaaatatattaatcataagtattaatttatcattctct 30543289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 33579329 - 33579428
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| || ||  |||||||| ||| |||||| ||||||||||| | |||| |||| ||||||||||||||  |||| |||||| ||||||    
T  33579329 tcttcaaatttaatctaaataattataatattcttaaaattaaaaatatattagtcataagcattaatttatcattctctaaaaaattactctttcaaaa 33579428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 24436935 - 24436845
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat-gataacatttatttatcattctctgcaaaaatactct 228  Q
    ||||||| |||| ||| ||||||||||||| | |||||| |||||||||||||  | |||||| |||||||| |||||  |||||| ||||    
T  24436935 ttcaaatttaatctatgttgttataatacttttaaaattaaaaatatattaatcaaaaacattaatttatcactctctaaaaaaattctct 24436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 40136193 - 40136131
Alignment:
Q  173 aaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaa 234  Q
    ||||| ||||| ||||||| |||| |||| |||||||||||||| |||||||||||| |||||    
T  40136193 aaattaaaaatctattaatcataaacattaatttatcattctctacaaaaatactctctcaaa 40136131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 45752242 - 45752188
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    ||||||||| |||||||| ||||||||| | || ||||||| |||||||||||||    
T  45752242 tcttcaaatttaatatatgttgttataaaattcccaaaattaaaaatatattaat 45752188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 52073442 - 52073364
Alignment:
Q  158 gttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| ||| |||||| ||||||||||||| || ||| || ||||||||||||||  |||| |||||| ||||||    
T  52073442 gttataatattcttaaaattaaaaatatattaatcataaacgttaatttatcattctctaaaaaattactctttcaaaa 52073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 19652300 - 19652223
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattct 213  Q
    |||||| || |||| ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| || |||||||||    
T  19652300 tcttcatatttaatctattttgttataatattcttaaaattaaaaatatattaataataagcattaatatatcattct 19652223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 23079852 - 23079929
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    |||||||||||| |||   ||||||||||| ||||| || |||||| |||||| ||||  ||||||||||||||||||    
T  23079852 ttcaaatctaatttatgccgttataatactttcaaagttaaaaatacattaatcataagtatttatttatcattctct 23079929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 6245070 - 6245126
Alignment:
Q  141 caaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataac 197  Q
    ||||| ||| |||||||||||||||| ||| ||| || | |||||||||||||||||    
T  6245070 caaatttaacatatattgttataatattcttaaagttaagaatatattaatgataac 6245126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 36668639 - 36668595
Alignment:
Q  152 tatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||||||||| ||| |||||| ||||||||||||| ||||    
T  36668639 tatattgttataatattcttaaaattaaaaatatattaatcataa 36668595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 41432767 - 41432675
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 228  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||| ||||||||||||| ||||  ||| |||||| |||||||  |||| ||||||    
T  41432767 tcttcaaatttaatctatgtagttataatattcttaaaattaaaaatatattaatcataagtattaatttattattctctaaaaaattactct 41432675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 44195924 - 44195976
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    |||||||| |||||||||||| |||||| || ||||||||||| || ||||||    
T  44195924 ttcaaatccaatatatattgtgataatattcacaaaattgaaagtacattaat 44195976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 44303788 - 44303840
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaat 191  Q
    |||||||| |||||||||||||||||||||| | ||||| ||| || ||||||    
T  44303788 ttcaaatccaatatatattgttataatactcgctaaattaaaagtacattaat 44303840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 50097716 - 50097804
Alignment:
Q  163 aatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    |||| ||| |||||| ||||||||||||| |||| || | |||||||| |||||  ||||||||||| ||||||  | |||||||||||    
T  50097716 aatattcttaaaattaaaaatatattaatcataaacaataatttatcactctctaaaaaaatactctttcaaaaaatgtgaaagatttc 50097804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 33187852 - 33187753
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||  ||||   |||||||||| ||||||    
T  33187852 tcttcaaatataatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcaccctctaagaaaatactctttcaaaa 33187753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 38138007 - 38138119
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| ||| ||||||||||| | |  ||||| ||||| ||||||| |||| |||| ||||||||||||||  ||||||||||||||||||    
T  38138007 tcttcaaatttaatctatgttgttataatatttttgaaattaaaaatgtattaatcataagcattaatttatcattctctaaaaaaatactctatcaaaa 38138106  T
Q  236 cctatgaaagatt 248  Q
      | |||||||||    
T  38138107 aatgtgaaagatt 38138119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 14676306 - 14676419
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||||||||||||||||  |||| |||| ||||||||||| ||  |||| |||||| ||||||    
T  14676306 tcttcaaatttaatctatgtagttataatattcttaaaattgaaaatatattaaccataagcattaatttatcattccctaaaaaattactctttcaaaa 14676405  T
Q  236 cctatgaaagattt 249  Q
      | ||||||||||    
T  14676406 aatgtgaaagattt 14676419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 31770246 - 31770306
Alignment:
Q  168 tctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactc 227  Q
    ||||||||||  |||||||||||| |||| ||||||||||||||||||| |||||||||||    
T  31770246 tctcaaaattacaaatatattaatcataaacatttatttatcattctctacaaaaatactc 31770306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 1278014 - 1278073
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  1278014 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 1278073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 44487338 - 44487227
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacc 237  Q
    ||||||| |||||||| |||||||| || ||| ||| || ||||||||||||  |||| |||| |||||||| |||||  ||||||||||||| ||||      
T  44487338 ttcaaatttaatatatgttgttatagtattcttaaagttaaaaatatattaaccataagcattaatttatcactctctaaaaaaatactctataaaaaaa 44487239  T
Q  238 tatgaaagattt 249  Q
    | ||||||||||    
T  44487238 tgtgaaagattt 44487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 12624379 - 12624326
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||| ||||    
T  12624379 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatgttaa 12624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 20513405 - 20513498
Alignment:
Q  158 gttataatactctcaaaattgaaaatatattaatgataac-atttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||||||||| ||||| || |||||| |||||| ||||  |||||||||||||||||| |||||  | ||| ||||||| | |||||||||||    
T  20513405 gttataatactttcaaagttaaaaatacattaatcataagtatttatttatcattctctacaaaaccattctctcaaaacttttgaaagatttc 20513498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 46303332 - 46303438
Alignment:
Q  140 tcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaaccta 239  Q
    |||||| |||||||| ||||||||||| ||| |||| | ||||||||||||| ||||     |||||||||||| |  ||||| ||||| ||||||  ||    
T  46303332 tcaaatttaatatatgttgttataatattctaaaaactaaaaatatattaatcataa----aatttatcattctttaaaaaaacactctttcaaaaaata 46303427  T
Q  240 tgaaagatttc 250  Q
    |||||||||||    
T  46303428 tgaaagatttc 46303438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 12884737 - 12884694
Alignment:
Q  153 atattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||    
T  12884737 atattgttataatactctcaaaataaaaaatatattaatcataa 12884694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 13858417 - 13858484
Alignment:
Q  156 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaa 222  Q
    |||||||||||||||||| ||| |||| |||||||| |||| |||| |||||||||| ||| ||||||    
T  13858417 ttgttataatactctcaatattaaaaacatattaatcataagcattcatttatcattatctacaaaaa 13858484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 17818350 - 17818441
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctct 215  Q
    |||||||| || ||||||||| |||| ||| |||||||| || | | |||||| |||||||| |||| ||| ||||| ||||||||||||||    
T  17818350 gtttagatgaattcttcaaatttaatctatgttgttatagtatttttaaaattaaaaatatagtaattatatacattaatttatcattctct 17818441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 45471898 - 45471863
Alignment:
Q  161 ataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||||||||||| ||||||||||||||||||    
T  45471898 ataatactctcaaaattaaaaatatattaatgataa 45471863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 4787998 - 4787908
Alignment:
Q  147 taatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaa-tactctatcaaaa 235  Q
    |||||||| ||||||||||| | | |||||| ||||||||||||| |||| |||| |||||||| |||||  ||||| |||||| ||||||    
T  4787998 taatatatgttgttataatatttttaaaattaaaaatatattaatcataagcattaatttatcactctctaaaaaaattactctttcaaaa 4787908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 22556689 - 22556595
Alignment:
Q  157 tgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    |||||||||| ||| |||||| ||||||||||||| |||| ||||  ||||||| |||||  ||||||||||| | ||||  | |||||||||||    
T  22556689 tgttataatattcttaaaattaaaaatatattaatcataagcattagtttatcactctctaaaaaaatactcttttaaaaaatgtgaaagatttc 22556595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 42267011 - 42266933
Alignment:
Q  138 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    |||||||| |||| ||| ||||||||||| ||| |||||| |||||||| |||  |||| |||| ||||||||||||||    
T  42267011 cttcaaatttaatctatgttgttataatattcttaaaattaaaaatatagtaaacataagcattaatttatcattctct 42266933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 21687497 - 21687562
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    ||||| ||||| ||||||||| |||||||  ||||||||||| | | |||||| ||||||||||||    
T  21687497 gtttatataaattcttcaaatttaatataagttgttataatatttttaaaattaaaaatatattaa 21687562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 22394230 - 22394287
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||| |||||||  ||||||||| | ||| |||||||||||||||||||| ||||    
T  22394230 ttcaaatttaatatactttgttataaaattcttaaaattgaaaatatattaatcataa 22394287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 38991476 - 38991399
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||| |||||||| || |||||||| ||| |||||  ||||||||||||| || ||| || ||||||||||||||    
T  38991476 ttcaaatttaatatatgttattataatattcttaaaataaaaaatatattaattataaactttaatttatcattctct 38991399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 13044223 - 13044315
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 228  Q
    ||||||||| |||||||| |||||||| || | | |||||| |||||||| |||| |||  |||| ||||||||||||||  |||| ||||||    
T  13044223 tcttcaaatttaatatatgttgttatattatttttaaaattaaaaatatagtaatcatatgcattaatttatcattctctaaaaaactactct 13044315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 45510418 - 45510510
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 228  Q
    ||||||||| |||| ||  | ||||||||| | | |||||| ||||||||||||| || |||||| ||||||||||||||  |||| ||||||    
T  45510418 tcttcaaatttaatctaagtagttataatatttttaaaatttaaaatatattaatcataaacattaatttatcattctctaaaaaattactct 45510510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 2502371 - 2502292
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  2502371 tcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 2502292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 8439400 - 8439287
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| ||| || |||||||| | | |||||| ||||||||||||| || |||||| ||||||||||||||  ||||||||| | ||||||    
T  8439400 tcttcaaatttaatctatgtttttataatattgttaaaattaaaaatatattaatcataaacattaatttatcattctct-aaaaaatactttttcaaaa 8439302  T
Q  236 cctatgaaagatttc 250  Q
      ||| |||||||||    
T  8439301 aatataaaagatttc 8439287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 22817344 - 22817254
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 228  Q
    ||||||| ||||| || || |||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||||| |  |||||||||||    
T  22817344 ttcaaatttaatacatgttattataatattcttaaaattaaaaatatattaatcataagcattcatttatcattctttataaaaatactct 22817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 29054592 - 29054722
Alignment:
Q  87 gaggaactaaaaaattgtatcgaatgaagattttaga-tgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatat 185  Q
    |||||||||||||||||||| |||||| |||||| ||  ||||| || || | ||||||| |||| ||||| ||||||||| | | |||||  |||||||    
T  29054592 gaggaactaaaaaattgtattgaatgaggatttttgagggtttatatgaatttttcaaatttaatctatatggttataatattattaaaataaaaaatat 29054691  T
Q  186 attaatgata-acatttatttatcattctct 215  Q
    | |||| ||| | ||| ||||||||||||||    
T  29054692 agtaatcatatatattaatttatcattctct 29054722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 4089402 - 4089303
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| |||| |||||| | | ||||||||||||||||||||  |||  ||| |||||||| | |||  ||||||||||| ||||||    
T  4089402 tcttcaaatttaatatatgttgtcataatatttttaaaattgaaaatatattaatcgtaagtattaatttatcactatctagaaaaatactctttcaaaa 4089303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 6026249 - 6026324
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattct 213  Q
    |||||||| ||| ||||||||||||||| | ||||| || |||||| |||||| ||||  ||||||||||||||||    
T  6026249 ttcaaatccaatctatattgttataatattttcaaagttaaaaatacattaatcataagtatttatttatcattct 6026324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 13120427 - 13120328
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||||  ||| ||| ||||||||||| | | |||||| ||||||||||||| |||  |||| ||||||||||||||  |||| |||||| ||||||    
T  13120427 tcttcaaattcaatctatgttgttataatattgttaaaattaaaaatatattaattatactcattaatttatcattctctaaaaaattactctttcaaaa 13120328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 33184278 - 33184356
Alignment:
Q  173 aaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||| ||||||||||| | |||| |||| |||||||| |||||  ||||||||||| ||||||  |||||||||||||    
T  33184278 aaattaaaaatatattagttataaacattaatttatcactctctaaaaaaatactctttcaaaaaatatgaaagatttc 33184356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 33677118 - 33677195
Alignment:
Q  156 ttgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||   |||||||||| ||||||    
T  33677118 ttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct---aaaatactctttcaaaa 33677195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 33939107 - 33939049
Alignment:
Q  158 gttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||| ||| |||||| ||||||||||||| || |||||| ||||||||||||||    
T  33939107 gttataatattcttaaaattaaaaatatattaatcataaacattaatttatcattctct 33939049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 26683393 - 26683505
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| |||||  |||||| | ||| |||||| ||||||||||||| | || |||| |||||||||||||   |||| |||||| ||||||    
T  26683393 tcttcaaatttaatttatataattataaaattcttaaaattaaaaatatattaatcacaagcattaatttatcattctc-aaaaaattactctttcaaaa 26683491  T
Q  236 cctatgaaagattt 249  Q
      ||||||||||||    
T  26683492 aatatgaaagattt 26683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 6695418 - 6695486
Alignment:
Q  183 tatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    ||||||||| |||| |||| ||||||||||||||  ||||||||||| ||||||  ||||||| |||||    
T  6695418 tatattaattataagcattcatttatcattctctaaaaaaatactctttcaaaaagtatgaaaaatttc 6695486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 19477332 - 19477424
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactct 228  Q
    ||||||||| |||| ||| ||||||||||| | | |||||| || ||||| |||| |||  |||| ||||||||||||||| |||| ||||||    
T  19477332 tcttcaaatttaatctatgttgttataatatttttaaaattaaatatatagtaatcatatgcattaatttatcattctctgaaaaattactct 19477424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 20381871 - 20381799
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatc 208  Q
    ||||||| | |||||||| ||||||||||| ||| |||||| ||||||||| ||| |||| |||| |||||||    
T  20381871 tcttcaattttaatatatgttgttataatattcttaaaattaaaaatatatcaatcataatcattaatttatc 20381799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 26289627 - 26289715
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaata 224  Q
    ||||||||| |||| ||| |||||||| || | | |||||| |||||||| |||| |||  |||| |||||||||||||| ||||||||    
T  26289627 tcttcaaatttaatctatgttgttatattatttttaaaattaaaaatatagtaatcatatgcattaatttatcattctctacaaaaata 26289715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 250
Target Start/End: Original strand, 13258562 - 13258676
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||||| ||| ||| || ||| |||||||| |||||| |||||||||||||  ||| |||| ||||||||||||||  ||||||||||| ||||||    
T  13258562 tcttcaaatccaatctatgttcttagaatactcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaa 13258661  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  13258662 aatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 1839825 - 1839711
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgata-acatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||||||| ||||||||||| | | |||||| || ||||||||||||||   ||| |||||||| |||||  ||||||||||| ||||||    
T  1839825 tcttcaaatttaatatatgttgttataatatttttaaaattaaacatatattaatgatatgtattaatttatcactctctaaaaaaatactctttcaaaa 1839726  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  1839725 aatgtgaaagatttc 1839711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 32502927 - 32503007
Alignment:
Q  155 attgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||| |||||||||||||||||| ||||||||||||| || |||||||| |||||||||||| ||||| |||| | ||||||    
T  32502927 attggtataatactctcaaaattaaaaatatattaataataaacattta-ttatcattctctacaaaattactatttcaaaa 32503007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 2457878 - 2457830
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 187  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  2457878 ttcaaatccaatctatgttgttataatactctcaaaattgaaaatatat 2457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 10878787 - 10878691
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||| || |||||||| ||||||||||| | | |||||| ||||||||||||| |||  ||| |||||||| |||||  ||||||||||| ||||||    
T  10878787 tcttcacatttaatatatgttgttataatatttttaaaattaaaaatatattaatcata--attaatttatcactctctaaaaaaatactctttcaaaa 10878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 35856535 - 35856436
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||||| ||| ||||||||||||||| ||| | |||| |||||||||| || || || ||| | ||||||||||||  ||||||||||| ||||||    
T  35856535 tcttcaaatcaaatctatattgttataatattcttataattaaaaatatattcatcataaatattaacttatcattctctaaaaaaatactctttcaaaa 35856436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 41455335 - 41455394
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  41455335 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 41455394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 11961532 - 11961467
Alignment:
Q  131 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||| ||||||||| |||| ||| | ||||||||||||| |||||| ||||||||||||| ||||    
T  11961532 ataaattcttcaaatttaatttatgtagttataatactctgaaaattaaaaatatattaataataa 11961467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 28517264 - 28517196
Alignment:
Q  138 cttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttattta 206  Q
    |||||||| |||||||| | ||||||||| ||| |||||| ||||||||||||| | |||||| |||||    
T  28517264 cttcaaatttaatatatgtagttataatattcttaaaattaaaaatatattaatcaaaacattaattta 28517196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 32229 - 32288
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  32229 tcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatatattaatcataa 32288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 16424214 - 16424273
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    ||||||||| |||||||| | ||||||||| ||| |||||| ||||||||||||| ||||    
T  16424214 tcttcaaatttaatatatgtagttataatattcttaaaattaaaaatatattaattataa 16424273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 27085424 - 27085503
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||||||| ||||||||||| | |  ||||| ||||||||||||| |||| |||| |||||||| |||||    
T  27085424 tcttcaaatttaatatatgttgttataatattttttaaattaaaaatatattaatcataagcattaatttatcactctct 27085503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 40985079 - 40985000
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||| |||| ||||| |||||| || | | |||||| ||||||||||||| || |||||| ||||||||||||||    
T  40985079 tcttcaaatttaatttatatagttatagtattattaaaattaaaaatatattaatcataaacattaatttatcattctct 40985000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 10255602 - 10255513
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattg-aaaatatattaatgataaca-tttatttatcattctctgcaaaaata 224  Q
    ||||||||| |||| ||  ||||||||||| ||| ||||||| ||||||||||||| |||| | || |||||| ||||||| ||||||||    
T  10255602 tcttcaaatttaatttaatttgttataatattcttaaaattgaaaaatatattaattataaaagttaatttatgattctctacaaaaata 10255513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 13537440 - 13537517
Alignment:
Q  159 ttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||| ||| |||||| ||||||||||||| |||| |||| |||||| |||||||  |||| |||||| ||||||    
T  13537440 ttataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttcaaaa 13537517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 13626988 - 13627065
Alignment:
Q  159 ttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||| ||| |||||| ||||||||||||| |||| |||| |||||| |||||||  |||| |||||| ||||||    
T  13626988 ttataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttcaaaa 13627065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 43007776 - 43007853
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||| |||| ||| ||||||||||| |||||||||| |||||| | |||| || ||| || ||||||||||||||    
T  43007776 ttcaaatttaatctatgttgttataatattctcaaaattaaaaatagagtaatcataaaccttaatttatcattctct 43007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 31632907 - 31633023
Alignment:
Q  131 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactcta 229  Q
    ||||| |||||||||| ||| ||| ||||||||||    |||||||| ||||||||||||| | || |||| |||||||||||||| ||||||||||||     
T  31632907 ataaattcttcaaatccaatctatgttgttataatg---tcaaaattaaaaatatattaatcagaagcattcatttatcattctctacaaaaatactctt 31633003  T
Q  230 tcaaaacctatgaaagattt 249  Q
    ||||||  | ||||||||||    
T  31633004 tcaaaaaatgtgaaagattt 31633023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 4841714 - 4841600
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||||  ||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| ||| |  ||||||||||| | ||||    
T  4841714 tcttcaaattgaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctataaaaaaatactctttaaaaa 4841615  T
Q  236 cctatgaaagatttc 250  Q
      | |||||||||||    
T  4841614 aatgtgaaagatttc 4841600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 7398785 - 7398707
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 215  Q
    |||||||||||||||||| | ||||||||||||| ||||||  |||||||| | | ||| |||| ||||||||||||||    
T  7398785 tcttcaaatctaatatatgtagttataatactcttaaaattacaaatatatcagtcatagcattaatttatcattctct 7398707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 19389882 - 19389720
Alignment:
Q  89 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 187  Q
    |||||||||||||||||| | | || |||||| || | |||| || || ||||||||| |||| ||| | ||||||||| | | |||||| |||||||||    
T  19389882 ggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatttaatctatgtagttataatatttttaaaattaaaaatatat 19389783  T
Q  188 taatgataa-catttatttatcattctctgcaaaaatactctatcaaaacctatgaaagattt 249  Q
    |||| |||| |||| ||||||||||||||  |||| || ||| ||||||  | ||||||||||    
T  19389782 taatcataagcattaatttatcattctctaaaaaattaatctttcaaaaattgtgaaagattt 19389720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 1475027 - 1474942
Alignment:
Q  131 ataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||| |||| ||||||||||||| ||||||||||||||| || ||| | ||||||||| || | |||||| ||||||||||||||    
T  1475027 ataaattctttaaatctaatatatgttgttataatactcttaacattaacaatatattagtggtaaacattcatttatcattctct 1474942  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 1935112 - 1935039
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatca 209  Q
    ||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||    
T  1935112 tcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatca 1935039  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 17668139 - 17668026
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    ||||||||| |||| ||| | ||||||||| ||| |||||||||||||||||||  |||| |||| ||||||||||| ||  |||| |||||| ||||||    
T  17668139 tcttcaaatttaatctatgtagttataatattcttaaaattgaaaatatattaagcataagcattaatttatcattccctaaaaaattactctttcaaaa 17668040  T
Q  236 cctatgaaagattt 249  Q
      | ||||||||||    
T  17668039 aatgtgaaagattt 17668026  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 26018819 - 26018896
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||| |||||    
T  26018819 ttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcactctct 26018896  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 37909067 - 37909158
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctctgcaaaaatactct 228  Q
    |||||||||  ||| ||||||||||||||||||| |||||| ||||| ||| ||| || |||||| ||||||||||||||  |||||||||||    
T  37909067 tcttcaaattcaatctatattgttataatactcttaaaattaaaaatttatcaattataaacattaatttatcattctct-aaaaaatactct 37909158  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 6491260 - 6491339
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctct 215  Q
    ||||||||| |||  ||| ||||||||||| ||| |||||| ||||||||||||| |||| |||| ||||||||||||||    
T  6491260 tcttcaaatttaacttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctct 6491339  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 9684796 - 9684697
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||||||||||||| ||  | ||||||||| ||| |||||| ||||||||||||| |||| |||| |||||||||| |||  |||| |||||| ||||||    
T  9684796 tcttcaaatctaatctaagtagttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattttctaaaaaattactctttcaaaa 9684697  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 29799701 - 29799785
Alignment:
Q  125 gtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatc 208  Q
    ||||| ||||| ||||||||| |||||||| || |||||||| | | |||||| ||||||||||||| |||| |||| |||||||    
T  29799701 gtttatataaattcttcaaatttaatatatgttattataatatttttaaaattaaaaatatattaatcataagcattaatttatc 29799785  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 3081337 - 3081238
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatactctatcaaaa 235  Q
    |||| |||| |||||||| || |||||||| ||| |||||| ||||||||||||| |||| |||  |||||||| |||||  ||||||||| | ||||||    
T  3081337 tctttaaatttaatatatgttcttataatattcttaaaattaaaaatatattaatcataagcatcaatttatcactctctcaaaaaatactatttcaaaa 3081238  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 15917527 - 15917582
Alignment:
Q  195 aacatttatttatcattctctgcaaaaatactctatcaaaacctatgaaagatttc 250  Q
    |||||| |||||||| ||||| |||||||||||| ||||||  |||||||||||||    
T  15917527 aacattaatttatcactctctacaaaaatactctttcaaaaaatatgaaagatttc 15917582  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 25779571 - 25779650
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||  |||||||| ||||||||||| ||| |||||| |||||||| |||| || || ||| ||||||||||||||    
T  25779571 tcttcaaaattaatatatgttgttataatattcttaaaattaaaaatataataattataaatattaatttatcattctct 25779650  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 13839613 - 13839480
Alignment:
Q  89 ggaactaaaaaattgtatcgaatgaagattttagatg-tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatat 187  Q
    |||||| |||||| |||| | | ||||||||| || | |||||||||  |||||||||| |||   | |||||||||||||||||||| | |||| ||||    
T  13839613 ggaactcaaaaatggtattgtacgaagattttggagggtttagataacttcttcaaatcaaatccgtgttgttataatactctcaaaaattaaaa-atat 13839515  T
Q  188 taatgat-aacatttatttatcattctctgcaaaa 221  Q
    |||| || || ||| |||||||||||||| |||||    
T  13839514 taatcataaatattcatttatcattctctacaaaa 13839480  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 19338566 - 19338524
Alignment:
Q  148 aatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||    
T  19338566 aatatatattgttataatattcttaaaattaaaaatatattaa 19338524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 35708767 - 35708689
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataacatttatttatcattctct 215  Q
    ||||||||| |||||||| |||||||| || | | |||||  ||||||||||||| ||| |||| |||||||| |||||    
T  35708767 tcttcaaatttaatatatgttgttatattatttttaaaatgaaaaatatattaatcatagcattaatttatcactctct 35708689  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 43265237 - 43265307
Alignment:
Q  126 tttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||||||||| |||||||||| |||  || ||||||||||| ||| |||| | |||||||||||| |||||    
T  43265237 tttagataaattcttcaaatcaaattaatgttgttataataatctaaaaactaaaaatatattaacgataa 43265307  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 6044609 - 6044698
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa-catttatttatcattctctgcaaaaatac 225  Q
    ||||||||| |||| ||| ||||||||||| ||| || ||| ||||||||| ||||||||  |||  |||||||||||||  ||||||||    
T  6044609 tcttcaaatttaatttatgttgttataatattcttaatattaaaaatatatgaatgataagtattagtttatcattctctaaaaaaatac 6044698  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 15916959 - 15917012
Alignment:
Q  137 tcttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaa 190  Q
    |||| |||| |||||||| ||||||||||| ||| |||||| ||||||||||||    
T  15916959 tctttaaatttaatatatgttgttataatattcttaaaatttaaaatatattaa 15917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 2561118 - 2561222
Alignment:
Q  86 ggaggaactaaaaaattgtatcgaatgaagattttagatgtttagataaactcttcaaatctaatatatattgttataatactctcaaaattgaaaatat 185  Q
    |||||||||| ||||| |||| ||||||||||||| |  ||| | || || ||||||||| |||| ||| | |||||| || | | |||||| |||||||    
T  2561118 ggaggaactagaaaatagtattgaatgaagatttttggggttcacatgaattcttcaaatttaatctatgtagttatactattattaaaatttaaaatat 2561217  T
Q  186 attaa 190  Q
    |||||    
T  2561218 attaa 2561222  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 28154785 - 28154845
Alignment:
Q  156 ttgttataatactctcaaaattgaaaatatattaatgat-aacatttatttatcattctct 215  Q
    ||||||||||| ||| |||||  ||||||||||||| || |||||| ||||||||||||||    
T  28154785 ttgttataatattcttaaaataaaaaatatattaatcataaacattaatttatcattctct 28154845  T

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Target: scaffold0717 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 1656 - 1713
Alignment:
Q  139 ttcaaatctaatatatattgttataatactctcaaaattgaaaatatattaatgataa 196  Q
    |||||||| ||| ||| ||||||||||| ||| |||||| ||||||||||||| ||||    
T  1656 ttcaaatccaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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