View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_10 (Length: 394)
Name: NF19756_low_10
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 4123209 - 4123583
Alignment:
| Q |
14 |
atatcaaatttatcacatcactcttgttatttctctctgtctctctcgcttaaggtgtttaggtgtctaccaaacattttcctaaaaattaaaattattt |
113 |
Q |
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| T |
4123209 |
atatcaaatctatcacatcactcttgttatttctctctgtctctctcgcttaaggtgtttaggtgtctaccaaacattttcctaaaaattaaaattattt |
4123308 |
T |
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| Q |
114 |
gactacctnnnnnnnntttgaagtaatgataggaaaaatcattgctggttttataagaatttctcttttctaatattggttatatnnnnnnntataacta |
213 |
Q |
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| T |
4123309 |
gactacctaaaaaaaatttgaagtaatgataggaaaaatcattgctggttttataagaatttctcttttctaatattggttatataaaaaa-tataacta |
4123407 |
T |
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| Q |
214 |
tcagaaacatgcannnnnnnnnnnncgaaacctgtaagatcctctctttgagattattggagattaggcaactcgttcccatttgaattagaagagattt |
313 |
Q |
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| T |
4123408 |
tcagaaacatgcaagagagagagagcgaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttgaattagaagagattt |
4123507 |
T |
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| Q |
314 |
catgcaattttttgttgctgaatcttgcatttgatcacaacattcaattaatgaagaagtcttcacattggatact |
389 |
Q |
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| T |
4123508 |
catgcaattttttgttgctgaatcttgcatttgatcacaacattccattaatgaacaagtcttcacattggatact |
4123583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 4361663 - 4361524
Alignment:
| Q |
240 |
gaaacctgtaagatcctctctttgagattattggagattaggcaactcgttcccatttgaattagaagagatttcatgcaattttttgttgctgaatctt |
339 |
Q |
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| T |
4361663 |
gaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatctgaattagaagagatttcatgtaattttttgttgctgaatctg |
4361564 |
T |
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| Q |
340 |
gcatttgatcacaacattcaattaatgaagaagtcttcac |
379 |
Q |
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| T |
4361563 |
gcatttgatcacaacattcaattaatgaagaagtcttcac |
4361524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 4335904 - 4335775
Alignment:
| Q |
240 |
gaaacctgtaagatcctctctttgagattattggagattaggcaactcgttcccatttgaattagaagagatttcatgcaattttttgttgctgaatctt |
339 |
Q |
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| T |
4335904 |
gaaacctgtaagatcctctctttgagaatattggagattaggcaactcgttcccatttgaatcagaagagatttcatgcaattttttgctggtgaatctt |
4335805 |
T |
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| Q |
340 |
gcatttgatcacaacattcaattaatgaag |
369 |
Q |
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| T |
4335804 |
gcacttgactgcgacattcaattagtgaag |
4335775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 239 - 381
Target Start/End: Complemental strand, 4345233 - 4345091
Alignment:
| Q |
239 |
cgaaacctgtaagatcctctctttgagattattggagattaggcaactcgttcccatttgaattagaagagatttcatgcaattttttgttgctgaatct |
338 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||| || | |||||| ||||| || |||| |
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| T |
4345233 |
cgaaacctgtaagataatctctttgagaatattggagattaggcaactcattcccatctgaattaaaagagattccaaggaattttgtgttgttgtatct |
4345134 |
T |
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| Q |
339 |
tgcatttgatcacaacattcaattaatgaagaagtcttcacat |
381 |
Q |
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|||| |||| ||| ||||||||||||||||| |||||||||| |
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| T |
4345133 |
tgcacttgaccacgacattcaattaatgaagtcgtcttcacat |
4345091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 4320123 - 4320206
Alignment:
| Q |
240 |
gaaacctgtaagatcctctctttgagattattggagattaggcaactcgttcccatttgaattagaagagatttcatgcaattt |
323 |
Q |
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||||||| ||||||||||||||| ||| |||||| ||||||| | || |||||||||||| || ||||||||||||| ||||| |
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| T |
4320123 |
gaaacctttaagatcctctctttcagaatattggtgattagggagttcattcccatttgaaataaaagagatttcatggaattt |
4320206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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