View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_low_13 (Length: 359)

Name: NF19756_low_13
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_low_13
NF19756_low_13
[»] chr8 (2 HSPs)
chr8 (1-314)||(33294699-33295012)
chr8 (5-314)||(25264818-25265126)
[»] chr3 (2 HSPs)
chr3 (5-314)||(53528456-53528766)
chr3 (5-314)||(33733789-33734100)
[»] chr4 (5 HSPs)
chr4 (5-343)||(55948177-55948517)
chr4 (5-314)||(19995328-19995638)
chr4 (5-314)||(53355577-53355884)
chr4 (5-343)||(44252086-44252424)
chr4 (1-304)||(39653654-39653963)
[»] chr7 (8 HSPs)
chr7 (5-314)||(31392902-31393210)
chr7 (5-314)||(8230865-8231174)
chr7 (5-314)||(45276885-45277193)
chr7 (6-314)||(32881963-32882271)
chr7 (54-314)||(21715908-21716167)
chr7 (74-314)||(40029002-40029243)
chr7 (5-49)||(40028951-40028995)
chr7 (5-41)||(21716165-21716201)
[»] chr2 (1 HSPs)
chr2 (5-310)||(1841024-1841328)
[»] chr5 (3 HSPs)
chr5 (5-313)||(1417891-1418199)
chr5 (5-314)||(25915173-25915486)
chr5 (5-314)||(30333282-30333588)
[»] chr1 (8 HSPs)
chr1 (5-314)||(33258339-33258647)
chr1 (5-314)||(33278511-33278819)
chr1 (5-341)||(7654506-7654842)
chr1 (5-314)||(36146190-36146497)
chr1 (5-314)||(28919920-28920229)
chr1 (1-314)||(19056761-19057074)
chr1 (11-130)||(24088742-24088863)
chr1 (198-304)||(24086358-24086465)
[»] chr6 (1 HSPs)
chr6 (22-313)||(19083427-19083719)
[»] scaffold0489 (1 HSPs)
scaffold0489 (22-313)||(6165-6462)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 33295012 - 33294699
Alignment:
Q  1 tgataatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33295012 tgataatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaataatatcaaaatcaaattataacaacaaa 33294913  T
Q  101 atcctcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctc 200  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  33294912 atcctcattgtgaatgctcgaattcccaatattaaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctc 33294813  T
Q  201 gtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33294812 gtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaaca 33294713  T
Q  301 tttgagtcgtgttc 314  Q
    |||| |||||||||    
T  33294712 tttgggtcgtgttc 33294699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 25264818 - 25265126
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  25264818 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcc 25264917  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  25264918 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 25265016  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25265017 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatatcatcatttttgtttcgaacatttg 25265116  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  25265117 ggtcgtgttc 25265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 53528456 - 53528766
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  53528456 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 53528555  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnncattaccaactctcgtc 203  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  53528556 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtc 53528655  T
Q  204 tcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53528656 tcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttctttgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 53528755  T
Q  304 gagtcgtgttc 314  Q
    | |||||||||    
T  53528756 gggtcgtgttc 53528766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 33734100 - 33733789
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  33734100 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 33734001  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnnncattaccaactctcgt 202  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  33734000 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgt 33733901  T
Q  203 ctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatt 302  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33733900 ctcatcattgatctcgcatctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatatcatcatttttgtttcgaacatt 33733801  T
Q  303 tgagtcgtgttc 314  Q
    || |||||||||    
T  33733800 tgggtcgtgttc 33733789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 55948517 - 55948177
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  55948517 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 55948418  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnnncattaccaactctcgt 202  Q
    ||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  55948417 tcattgtgaatactcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttgttttcattaccaactctcgt 55948318  T
Q  203 ctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  55948317 ctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttctttgtcaattctttgaactctaatctcatcatttttgttttgaacatt 55948218  T
Q  303 tgagtcgtgttcnnnnnnnnccggttgatttggaagattgt 343  Q
    || |||||||||        |||||||||||||||||||||    
T  55948217 tgggtcgtgttcttttttttccggttgatttggaagattgt 55948177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 19995638 - 19995328
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  19995638 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 19995539  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnncattaccaactctcgtc 203  Q
    ||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  19995538 tcattgtgaatgctcaaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtc 19995439  T
Q  204 tcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19995438 tcatcattgatctcgcatctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatatcatcatttttgtttcgaacattt 19995339  T
Q  304 gagtcgtgttc 314  Q
    | |||||||||    
T  19995338 gggtcgtgttc 19995328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 53355577 - 53355884
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  53355577 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcc 53355676  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  53355677 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--tttttttcattaccaactctcgtct 53355774  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  53355775 catcattgatctcgcatctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatatcatcatttttgtttcgaacatttg 53355874  T
Q  305 agtcgtgttc 314  Q
      ||||||||    
T  53355875 gatcgtgttc 53355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 343
Target Start/End: Original strand, 44252086 - 44252424
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||    
T  44252086 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 44252185  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||| ||||||||||||||||       ||||||||||||||||||| |||||||||||||||||         ||||||||||||| ||||    
T  44252186 tcattgtgaatgatcgaattcccaatattgaaaaaattcacaaaattctcaaattaaaaaacctaaagaatgatttttttttcattaccaactcttgtct 44252285  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44252286 catcattgatctcgcatctctgttgtttcttggttactccaaatgctttcttcatcaattctttgaactctaatctcatcatttttgtttcgaacatttg 44252385  T
Q  305 agtcgtgttcnnnnnnnnccggttgatttggaagattgt 343  Q
     |||||||||        |||||||||||||||||||||    
T  44252386 ggtcgtgttcttttttttccggttgatttggaagattgt 44252424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 39653654 - 39653963
Alignment:
Q  1 tgataatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaa 100  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| | ||||| || |||||| ||||||||||||||||||||    
T  39653654 tgataatggtcagattgacgcctcaacactaaaatccacaatgttcatagtcccaacaaaattcttattgataatatcataatcaaattataacaacaaa 39653753  T
Q  101 atcctcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatg-------annnnnnnnncattacc 193  Q
     ||||||||| |||||||| ||||| |||||||       ||||||||| |  |||||||||||||||||||||||                 |||||||    
T  39653754 gtcctcattgagaatgctcaaattctcaatattgaaaaaattcacaaaacttccaaattgaaaaacctaaagaatggattttctattttttttcattacc 39653853  T
Q  194 aactctcgtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtt 293  Q
     ||||||||| |||||||| |||||| |||||| | ||| ||||||| ||||||||||||||| ||||||||||||||| |  ||||||| |||||||||    
T  39653854 -actctcgtcacatcattgttctcgcgtctctgctattttttggtcattccaaatgctttctttgtcaattctttgaacccgcatctcattatttttgtt 39653952  T
Q  294 tcgaacatttg 304  Q
    | || ||||||    
T  39653953 ttgagcatttg 39653963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 31393210 - 31392902
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  31393210 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtctcaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 31393111  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  31393110 tcattgtgaatgctcgaatttccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 31393012  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31393011 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcatcaattctttgaactctaatctcatcatttttgtttcgaacatttg 31392912  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  31392911 ggtcgtgttc 31392902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 8231174 - 8230865
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||||  | |||||||||||||||||||||||||||||||    
T  8231174 aatggtcagattgacatctcaacactaaaattcacaatgttcatagtctcaaataaacttttattgttaatatcaaaatcaaattataacaacaaaatcc 8231075  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  8231074 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtct 8230975  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8230974 catcattgatctcgcatctctaatgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 8230875  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  8230874 ggtcgtgttc 8230865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 45276885 - 45277193
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  45276885 aatggtcagattgacatcttaacactaaaatccacaatgttcatagtcccaactaaaattttattgataatatcgaaatcaaattataacaacaaaatcc 45276984  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  45276985 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 45277083  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||    
T  45277084 catcattgatctcgcatctctgttgtttcttggtcactccagatgctttcttcatcaattctttgaacgctaatatcatcatttttgtttcgaacatttg 45277183  T
Q  305 agtcgtgttc 314  Q
      ||||||||    
T  45277184 gatcgtgttc 45277193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 32882271 - 32881963
Alignment:
Q  6 atggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcct 105  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||| || ||||||||||||||||||||||||||||||||    
T  32882271 atggtcaaattgacatctcaacactaaaatccacaatgttcatagtccgaactaattttttattgataatatcaaaatcaaattataacaacaaaatcct 32882172  T
Q  106 cattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtctc 205  Q
    ||||||||||||||||| ||||||||||       ||||||||||||| |||||||||||||||||||||||         |||||| ||||||||||||    
T  32882171 cattgtgaatgctcgaactcccaatattgaaaaaattcacaaaattctaaaattgaaaaacctaaagaatgatttttttttcattacaaactctcgtctc 32882072  T
Q  206 atcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttga 305  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32882071 atcattgatctcgcatctcaactgtttcttggtcactccaaatgctttattcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttgg 32881972  T
Q  306 gtcgtgttc 314  Q
    |||||||||    
T  32881971 gtcgtgttc 32881963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 54 - 314
Target Start/End: Complemental strand, 21716167 - 21715908
Alignment:
Q  54 caactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattct 153  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  21716167 caactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattct 21716068  T
Q  154 caaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgcttt 253  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21716067 caaattgaaaaacctaaagaatgatttttttt-cattaccaactctcgtctcatcattgatctcgcatctctgctgtttcttggtcactccaaatgcttt 21715969  T
Q  254 cttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttgagtcgtgttc 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21715968 cttcgtcaattctttgaactctaatatcatcatttttgtttcgaacatttgggtcgtgttc 21715908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 74 - 314
Target Start/End: Original strand, 40029002 - 40029243
Alignment:
Q  74 atatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaaga 173  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||    
T  40029002 atatcaaaatcaaattataacaacaaaatcctcattatgaatgctcgaatttccaatattgaaaaa-ttcacaaaattctcaaattgaaaaacctaaaga 40029100  T
Q  174 atgannnnnnnnn--cattaccaactctcgtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaa 271  Q
    ||||           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40029101 atgatttttttttttcattaccaactctcgtctcatcattgatctcacatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaa 40029200  T
Q  272 ctctaatctcatcatttttgtttcgaacatttgagtcgtgttc 314  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  40029201 ctctaatctcatcatttttgtttcgaacatttgggtcgtgttc 40029243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40028951 - 40028995
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcata 49  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  40028951 aatggtcagattgacatctcaacactaaaatccacaatgttcata 40028995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 21716201 - 21716165
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaa 41  Q
    |||||||||||| ||||||||||||||||||||||||    
T  21716201 aatggtcagattgacatctcaacactaaaatccacaa 21716165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 310
Target Start/End: Complemental strand, 1841328 - 1841024
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  1841328 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaataaaattataacaacaaaatcc 1841229  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  1841228 tcattgtgaatgctcgaattcccaatattgaaacaattcacaaaattctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 1841130  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841129 catcattgatctcgcatctctgctgtttcttggtcactctaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 1841030  T
Q  305 agtcgt 310  Q
     |||||    
T  1841029 ggtcgt 1841024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 1417891 - 1418199
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||||||||||||||||||||    
T  1417891 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcc 1417990  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    ||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  1417991 tcactgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtct 1418090  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1418091 catcattgatctcgcatctctgctgtttcttggtcactccaaatgccttcttcgtcaattctttgaactctaatctcatcatttttatttcgaacatttg 1418190  T
Q  305 agtcgtgtt 313  Q
     ||||||||    
T  1418191 ggtcgtgtt 1418199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 25915173 - 25915486
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||    
T  25915173 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaatcataacaacaaaatcc 25915272  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattg-aaaaacctaaagaatga---nnnnnnnnncattaccaactctc 200  Q
    ||||||||||||||| |||||||||||||       |||||||||||||||||||| |||||||||||||||||            ||||||||||||||    
T  25915273 tcattgtgaatgctcaaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaaacctaaagaatgattttttttttctcattaccaactctc 25915372  T
Q  201 gtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915373 gtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgatttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaaca 25915472  T
Q  301 tttgagtcgtgttc 314  Q
    |||| |||||||||    
T  25915473 tttgggtcgtgttc 25915486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 30333588 - 30333282
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  30333588 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtccca-ctaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 30333490  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  30333489 tcattgtgaatgctcgaattcccaatatt-gaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 30333392  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30333391 catcattgatctcgcatctctgctatttcttggtcactccaaatactttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 30333292  T
Q  305 agtcgtgttc 314  Q
     || ||||||    
T  30333291 ggttgtgttc 30333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 33258339 - 33258647
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  33258339 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcc 33258438  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||    
T  33258439 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaactctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 33258537  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  33258538 catcattgatctcgcatctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactttaatatcatcatttttgtttcgaacatttg 33258637  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  33258638 ggtcgtgttc 33258647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 33278511 - 33278819
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  33278511 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcc 33278610  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    |||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||    
T  33278611 tcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaactctcaaattgaaaaacctaaagaatga-ttttttttcattaccaactctcgtct 33278709  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  33278710 catcattgatctcgcatctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactttaatatcatcatttttgtttcgaacatttg 33278809  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  33278810 ggtcgtgttc 33278819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 341
Target Start/End: Complemental strand, 7654842 - 7654506
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  7654842 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 7654743  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnn-cattaccaactctcgtc 203  Q
    ||||||||||| |||||||||||||||||       ||||||||||||| |||||||||||||||||||||||          |||||||||||||||||    
T  7654742 tcattgtgaatactcgaattcccaatattgaaaaa-ttcacaaaattcttaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtc 7654644  T
Q  204 tcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 303  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7654643 tcatcattgatctcgcatctctgttgtttcttggtcacttcaaatgctttctttgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 7654544  T
Q  304 gagtcgtgttcnnnnnnnnccggttgatttggaagatt 341  Q
    | |||||||||        |||||||||||||||||||    
T  7654543 gggtcgtgttcttttttttccggttgatttggaagatt 7654506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 36146497 - 36146190
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||| ||||||||||    
T  36146497 aatggtcagattgacatctcaacactaaaatccacaatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataataacaaaatcc 36146398  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctcgtct 204  Q
    ||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    
T  36146397 tcattgtgaatactcgaattcccaatattgaaaaa-ttcacaaaattctcaaattgaaaaacctaaagaatgatttttttt-cattaccaactctcgtct 36146300  T
Q  205 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36146299 catcattgatctcgcatctctgttgtttcttggtcactccaaatgctttctttgtcaattctttgaactctaatctcatcatttttgtttcgaacatttg 36146200  T
Q  305 agtcgtgttc 314  Q
     |||||||||    
T  36146199 ggtcgtgttc 36146190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 28920229 - 28919920
Alignment:
Q  5 aatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcc 104  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  28920229 aatgatcagattgaaatctcaacactaaaatccacaatgttcatagtccca-ctaaacttttattgataatatcaaaatcaaattataacaacaaaatcc 28920131  T
Q  105 tcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnnncattaccaactctcgtc 203  Q
    |||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  28920130 tcattgtgaatgctcgaatttccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatgttttttttcattaccaactctcgtc 28920031  T
Q  204 tcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28920030 tcatcattgatctcgcatctctgctgtttcttggtcactccaaatactttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacattt 28919931  T
Q  304 gagtcgtgttc 314  Q
    | || ||||||    
T  28919930 gggttgtgttc 28919920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 19056761 - 19057074
Alignment:
Q  1 tgataatggtcagattaacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaa 100  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||| || |||||||||||||||||||||||||||    
T  19056761 tgataatggtcagattgacatctcaacactaaaatctacaatgttcacagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaa 19056860  T
Q  101 atcctcattgtgaatgctcgaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnncattaccaactctc 200  Q
    ||||||||||||||||||| |||| ||||||||       |||| ||||||||||||||||||||||||||||||||         ||||||||||||||    
T  19056861 atcctcattgtgaatgctcaaatttccaatattgaaaaaattcaaaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctc 19056960  T
Q  201 gtctcatcattgatctcgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaaca 300  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  19056961 gtctcatcattgatctcgcatctctgttgtttcttggttactcaaaattctttcttcgtcaattctttgaactctaatctcatcatttttgttttgaata 19057060  T
Q  301 tttgagtcgtgttc 314  Q
    |||| |||||||||    
T  19057061 tttgggtcgtgttc 19057074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 24088863 - 24088742
Alignment:
Q  11 cagattaacatctcaacactaaaatccacaatgttcata--gtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcctcat 108  Q
    |||||| |||||||||||| |||||||||||||| ||||  |||| ||| ||||| ||||| || |||||| |||||||||||||||| |||||||||||    
T  24088863 cagattgacatctcaacaccaaaatccacaatgtccatatagtcctaacaaaactcttattgataatatcataatcaaattataacaaaaaaatcctcat 24088764  T
Q  109 tgtgaatgctcgaattcccaat 130  Q
    |  ||||||| |||||||||||    
T  24088763 taagaatgcttgaattcccaat 24088742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 24086465 - 24086358
Alignment:
Q  198 ctcgtctcatcattgatctcgcatctctgttgtttcttggtcactccaaa-tgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcg 296  Q
    ||||||||||||||| |||||  |||||| |||||||| || || ||||| |||||||||||||||||||||||||||| | |||||||||||||||| |    
T  24086465 ctcgtctcatcattgttctcgtgtctctgatgtttcttagttaccccaaaatgctttcttcgtcaattctttgaactctcaactcatcatttttgttttg 24086366  T
Q  297 aacatttg 304  Q
    | ||||||    
T  24086365 agcatttg 24086358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 19083719 - 19083427
Alignment:
Q  22 ctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaatgatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcga 121  Q
    |||||||||||||||||||||||||||||||  || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19083719 ctcaacactaaaatccacaatgttcatagtcataaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcga 19083620  T
Q  122 attcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnn-cattaccaactctcgtctcatcattgatctcgca 220  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  19083619 attcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatctcgca 19083520  T
Q  221 tctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttgagtcgtgtt 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19083519 tctctgctgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaacatttgggtcgtgtt 19083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 6462 - 6165
Alignment:
Q  22 ctcaacactaaaatccacaatgttcatagtcccaact-aaactttt-attaatgatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctc 119  Q
    |||||||||||||||||||||||||||||||  || | |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6462 ctcaacactaaaatccacaatgttcatagtcataaattaaactttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctc 6363  T
Q  120 gaattcccaatattnnnnnnnttcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnnn---cattaccaactctcgtctcatcattgatct 216  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  6362 gaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttttcattaccaactctcgtctcatcattgatct 6263  T
Q  217 cgcatctctgttgtttcttggtcactccaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaac-atttgagtcgtgtt 313  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  6262 cgcatctctgctgtttcttggtcactcaaaatgctttcttcgtcaattctttgaactctaatctcatcatttttgtttcgaactatttgggtcgtgtt 6165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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