View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19756_low_15 (Length: 355)
Name: NF19756_low_15
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 153 - 337
Target Start/End: Complemental strand, 16862034 - 16861850
Alignment:
| Q |
153 |
caaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactcacttggcgtctcaccacttccttttttgacgtc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16862034 |
caaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactcacttggcgtctcaccacttccttttttgacgtc |
16861935 |
T |
|
| Q |
253 |
tgtcttgtttttcctgcttgagaagcagctatggtggccgcaacaatgttatttgattggttgtcattagatcctaagaagagtc |
337 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16861934 |
tgtcttgttgttcctgcttgagaagcagctatggtggccgcaacaatgttatttgattggttgtcattagatcctaagaagagtc |
16861850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 16865366 - 16865243
Alignment:
| Q |
34 |
ggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcaagtt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16865366 |
ggtttctcagaactaacagaaaattcatcaccaggtatatactctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcgagtt |
16865267 |
T |
|
| Q |
134 |
tcgccaccgtttccaaaagcaaag |
157 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
16865266 |
tcatcaccgtttccaaaagcaaag |
16865243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 40636131 - 40635933
Alignment:
| Q |
22 |
acatcaactcatggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaatta |
121 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
40636131 |
acatcaactcttggtttctcacaactaatagaaaactcatcgccaggtgtatactctttgaaacacgccaatctcccaagttcttcaacttcatcaatta |
40636032 |
T |
|
| Q |
122 |
ttaagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactca |
220 |
Q |
| |
|
| || || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40636031 |
tcaaatccagttttgccaccgtttccacgagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagcaattttactca |
40635933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 40648094 - 40647896
Alignment:
| Q |
22 |
acatcaactcatggtttctcagaactaacagaaaattcatcaccaggtgtatactctttgaagcacgctaacctcccaagttcttcaacttcatcaatta |
121 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||||| || ||||||||||||| || || |||| ||||||||||||||||||||||||| |
|
|
| T |
40648094 |
acatcaactcttggtttctcacatctaacagaaaattcatcaccatgtctatactctttgaaacatgccaaccgaccaagttcttcaacttcatcaatta |
40647995 |
T |
|
| Q |
122 |
ttaagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgatagccattttactca |
220 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
40647994 |
ttaagtccagtttcgccacggtttccacaagcaatgaaacaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtaataacaattttactca |
40647896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 4780048 - 4780194
Alignment:
| Q |
74 |
actctttgaagcacgctaacctcccaagttcttcaacttcatcaattattaagtcaagtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaa |
173 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||| ||||| | | || | ||| || || ||||||| ||||||||| |||||||||||||| |
|
|
| T |
4780048 |
actctttaaagcaatctaatctcccaagttcttcaacttcctcaataacaagatccaattttgcaactgtttccacaagcaaagatgcaaaagcagcaaa |
4780147 |
T |
|
| Q |
174 |
aggcaatgcttcagaaaactcaagactagtgatagccattttactca |
220 |
Q |
| |
|
||| | ||| ||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
4780148 |
aggaagtgcctcagagaattcaagactagtgatagcaattttactca |
4780194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 51862940 - 51862864
Alignment:
| Q |
130 |
agtttcgccaccgtttccaaaagcaaagaagcaaaagcagcaaaaggcaatgcttcagaaaactcaagactagtgat |
206 |
Q |
| |
|
||||| |||||| |||||| ||||||||||| |||||||||||||| | |||||| || |||||||| |||||||| |
|
|
| T |
51862940 |
agttttgccaccatttccacaagcaaagaagtgaaagcagcaaaaggtagtgcttctgagaactcaaggctagtgat |
51862864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University