View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_low_17 (Length: 339)

Name: NF19756_low_17
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_low_17
NF19756_low_17
[»] chr4 (24 HSPs)
chr4 (191-324)||(26620032-26620165)
chr4 (113-165)||(26620211-26620263)
chr4 (1-53)||(26620321-26620373)
chr4 (1-42)||(48782421-48782462)
chr4 (1-36)||(22678296-22678331)
chr4 (1-42)||(29511265-29511306)
chr4 (1-38)||(35231912-35231949)
chr4 (1-41)||(354188-354228)
chr4 (1-41)||(44013895-44013935)
chr4 (1-36)||(9834502-9834537)
chr4 (1-36)||(22828388-22828423)
chr4 (1-36)||(44217928-44217963)
chr4 (1-35)||(19093141-19093175)
chr4 (6-36)||(42513012-42513042)
chr4 (1-42)||(36408974-36409015)
chr4 (1-42)||(36423140-36423181)
chr4 (3-36)||(38009753-38009786)
chr4 (3-36)||(56576091-56576124)
chr4 (4-36)||(8735614-8735646)
chr4 (5-41)||(23621575-23621611)
chr4 (1-41)||(33755013-33755053)
chr4 (4-36)||(38617296-38617328)
chr4 (1-41)||(52061780-52061820)
chr4 (1-41)||(53599768-53599808)
[»] chr6 (8 HSPs)
chr6 (113-165)||(4087183-4087235)
chr6 (1-42)||(22050267-22050308)
chr6 (1-36)||(1751418-1751453)
chr6 (1-39)||(17123969-17124007)
chr6 (1-42)||(24663598-24663639)
chr6 (1-33)||(1252385-1252417)
chr6 (1-41)||(17193377-17193417)
chr6 (1-41)||(23777515-23777555)
[»] chr1 (10 HSPs)
chr1 (1-42)||(31487756-31487797)
chr1 (1-47)||(35531267-35531313)
chr1 (1-41)||(13566898-13566938)
chr1 (1-36)||(12231054-12231089)
chr1 (1-36)||(29830972-29831007)
chr1 (1-36)||(40926736-40926771)
chr1 (1-36)||(43500725-43500760)
chr1 (1-39)||(51974151-51974189)
chr1 (4-41)||(1024778-1024815)
chr1 (1-33)||(37609290-37609322)
[»] chr8 (11 HSPs)
chr8 (1-36)||(14228308-14228343)
chr8 (1-41)||(18842748-18842788)
chr8 (1-36)||(8453222-8453257)
chr8 (1-36)||(15596563-15596598)
chr8 (1-36)||(18291682-18291717)
chr8 (1-36)||(35052272-35052307)
chr8 (1-41)||(1245531-1245571)
chr8 (1-33)||(13328189-13328221)
chr8 (1-33)||(14263763-14263795)
chr8 (4-36)||(34982051-34982083)
chr8 (4-36)||(38482778-38482810)
[»] chr7 (13 HSPs)
chr7 (114-165)||(42077930-42077981)
chr7 (1-41)||(32528312-32528352)
chr7 (1-36)||(5732062-5732097)
chr7 (1-36)||(17896480-17896515)
chr7 (1-36)||(33174026-33174061)
chr7 (1-44)||(44820588-44820631)
chr7 (1-39)||(32966035-32966073)
chr7 (1-35)||(36922459-36922493)
chr7 (1-42)||(8382045-8382086)
chr7 (1-42)||(41675170-41675211)
chr7 (4-36)||(8265171-8265203)
chr7 (1-41)||(31430778-31430818)
chr7 (4-36)||(33099824-33099856)
[»] chr2 (10 HSPs)
chr2 (1-39)||(3376263-3376301)
chr2 (1-42)||(44360652-44360693)
chr2 (1-36)||(10812418-10812453)
chr2 (1-36)||(11222305-11222340)
chr2 (1-36)||(15182990-15183025)
chr2 (1-36)||(36375792-36375827)
chr2 (1-34)||(30264593-30264626)
chr2 (11-44)||(37660119-37660152)
chr2 (4-36)||(15893569-15893601)
chr2 (4-40)||(36404826-36404862)
[»] chr5 (11 HSPs)
chr5 (1-42)||(2673955-2673996)
chr5 (4-36)||(12869882-12869914)
chr5 (1-33)||(36239659-36239691)
chr5 (1-36)||(4175463-4175498)
chr5 (1-36)||(4985158-4985193)
chr5 (1-36)||(9127334-9127369)
chr5 (1-36)||(16124243-16124278)
chr5 (1-36)||(38910474-38910509)
chr5 (4-36)||(7579650-7579682)
chr5 (1-29)||(17869292-17869320)
chr5 (4-36)||(39073248-39073280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (114-170)||(11731-11787)
[»] chr3 (14 HSPs)
chr3 (1-45)||(29698210-29698254)
chr3 (113-157)||(40417459-40417503)
chr3 (1-36)||(33491131-33491166)
chr3 (1-36)||(40318920-40318955)
chr3 (1-36)||(42671882-42671917)
chr3 (1-36)||(45101350-45101385)
chr3 (1-39)||(27992459-27992497)
chr3 (1-42)||(34266426-34266467)
chr3 (1-42)||(54106482-54106523)
chr3 (1-37)||(24981509-24981545)
chr3 (4-36)||(29803870-29803902)
chr3 (1-41)||(49123741-49123781)
chr3 (1-33)||(52627233-52627265)
chr3 (1-33)||(52663661-52663693)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-36)||(8373-8408)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 26620165 - 26620032
Alignment:
Q  191 taaatagatctgtgtcaatatcagaggttttaaacaaacaataagtttggggtttagaatatggggattttacttctattatttacttatcatgttaata 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620165 taaatagatctgtgtcaatatcagaggttttaaacaaacaataagtttggggtttagaatatggggattttacttctattatttacttatcatgttaata 26620066  T
Q  291 acaattgtgtaccagatacatgataggataaaat 324  Q
    ||||||||||||||||| ||||||| ||||||||    
T  26620065 acaattgtgtaccagatgcatgataagataaaat 26620032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 26620263 - 26620211
Alignment:
Q  113 gttgggttaaaatatatttcgattgcatgttaatggaattgattttacttcta 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620263 gttgggttaaaatatatttcgattgcatgttaatggaattgattttacttcta 26620211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26620373 - 26620321
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataattgaattgaggaa 53  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  26620373 atgtcaaaatgtgacaattaaaaaggaacggagttagtaattgaattgaggaa 26620321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48782421 - 48782462
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  48782421 atgtcaaaatgtgacaattaaaaatgaacggatgtaataatt 48782462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22678331 - 22678296
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22678331 atgtcaaaatgtgacaattaaaaatgaacggaggta 22678296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29511265 - 29511306
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  29511265 atgtcaaaaggtgacaattaaaaatgaacggaggtagtaatt 29511306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35231912 - 35231949
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35231912 atgtcaaaatgtgacaattaaaaaggaacggaggtaat 35231949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 354188 - 354228
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  354188 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaat 354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44013935 - 44013895
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  44013935 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaat 44013895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9834502 - 9834537
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9834502 atgtcaaaatgtgacaattaaaaaggaacggaggta 9834537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22828423 - 22828388
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22828423 atgtcaaaatgtgacaattaaaaaggaacggaggta 22828388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44217928 - 44217963
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44217928 atgtcaaaatgtgacaattaaaaaggaacggaggta 44217963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19093175 - 19093141
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19093175 atgtcaaaatgtgacaattaaaaaggaacggaggt 19093141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 42513042 - 42513012
Alignment:
Q  6 aaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||||||||||    
T  42513042 aaaatgtgacaattaaaaatgaacggaggta 42513012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36408974 - 36409015
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  36408974 atgtcaaaatatgacaattaaaaaggaacggaggtagtaatt 36409015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36423140 - 36423181
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  36423140 atgtcaaaatatgacaattaaaaaggaacggaggtagtaatt 36423181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 38009786 - 38009753
Alignment:
Q  3 gtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||| |||||||||||    
T  38009786 gtcaaaatgtgacaattaaaaaggaacggaggta 38009753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 56576124 - 56576091
Alignment:
Q  3 gtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||| |||||||||||    
T  56576124 gtcaaaatgtgacaattaaaaaggaacggaggta 56576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8735614 - 8735646
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  8735614 tcaaaatgtgacaattaaaaaggaacggaggta 8735646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 23621611 - 23621575
Alignment:
Q  5 caaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  23621611 caaaatgtgacaattaaaaaggaacggaggtagtaat 23621575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33755053 - 33755013
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  33755053 atgttaaaatgtgacaattaaaaaggaacggaggtagtaat 33755013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 38617328 - 38617296
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  38617328 tcaaaatgtgacaattaaaaaggaacggaggta 38617296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52061780 - 52061820
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||| ||||||||||||| ||||||||||| ||||    
T  52061780 atgtcaaaatatgacaattaaaaaggaacggaggtagtaat 52061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53599808 - 53599768
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  53599808 atgttaaaatgtgacaattaaaaaggaacggaggtagtaat 53599768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 4087235 - 4087183
Alignment:
Q  113 gttgggttaaaatatatttcgattgcatgttaatggaattgattttacttcta 165  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  4087235 gttgggttaaaattaatttcgattgcatgttaatggaattgattttatttcta 4087183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22050267 - 22050308
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  22050267 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaatt 22050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1751453 - 1751418
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1751453 atgtcaaaatgtgacaattaaaaaagaacggaggta 1751418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17124007 - 17123969
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaata 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  17124007 atgtcaaaatgtgacaattaaaaaggaatggaggtaata 17123969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24663598 - 24663639
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| ||||||| ||| |||||    
T  24663598 atgtcaaaatgtgacaattaaaaaggaacggatgtagtaatt 24663639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1252385 - 1252417
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||| ||||||||||||||||||    
T  1252385 atgtcaaaatgtgataattaaaaatgaacggag 1252417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17193377 - 17193417
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    ||||||||| |||||||||||||| ||||||||||| ||||    
T  17193377 atgtcaaaacgtgacaattaaaaaggaacggaggtagtaat 17193417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23777515 - 23777555
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  23777515 atgtcaaaaagtgacaattaaaaaggaacgaaggtaataat 23777555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31487797 - 31487756
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31487797 atgtcaaaatgtgacaattaaaaaggaacggaggtaataatt 31487756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35531313 - 35531267
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataattgaatt 47  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||    
T  35531313 atgtcaaaatgtgacaattaaaaaggaacggaggtagtatttgaatt 35531267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13566898 - 13566938
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  13566898 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaat 13566938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12231089 - 12231054
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12231089 atgtcaaaatgtgacaattaaaaaggaacggaggta 12231054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29830972 - 29831007
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  29830972 atgtcaaaatgtgacaattaaaaaggaacggaggta 29831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40926771 - 40926736
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  40926771 atgtcaaaatgtgacaattaaaaaagaacggaggta 40926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43500725 - 43500760
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  43500725 atgtcaaaatgtgacaattaaaaaggaacggaggta 43500760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51974189 - 51974151
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaata 39  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  51974189 atgtcaaaaagtgacaattaaaaaggaacggaggtaata 51974151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 1024778 - 1024815
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  1024778 tcaaaatgtgacaattaaaaaggaacggaggtagtaat 1024815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37609322 - 37609290
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  37609322 atgtcaaaatgtgacaattaaaaaggaacggag 37609290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14228343 - 14228308
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  14228343 atgtcaaaatgtgacaattaaaaatgaacggaggta 14228308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18842748 - 18842788
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  18842748 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaat 18842788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8453257 - 8453222
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8453257 atgtcaaaatgtgacaattaaaaaggaacggaggta 8453222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15596563 - 15596598
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  15596563 atgtcaaaatgtgacaattaaaaaggaacggaggta 15596598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18291682 - 18291717
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  18291682 atgtcaaaatgtgacaattaaaaaggaacggaggta 18291717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 35052272 - 35052307
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  35052272 atgtcaaaatgtgacaattaaaaaggaacggaggta 35052307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1245531 - 1245571
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    ||||||||| |||||||||||||| ||||||| ||||||||    
T  1245531 atgtcaaaaagtgacaattaaaaaggaacggatgtaataat 1245571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13328189 - 13328221
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  13328189 atgtcaaaatgtgacaattaaaaaggaacggag 13328221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14263763 - 14263795
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  14263763 atgtcaaaatgtgacaattaaaaaagaacggag 14263795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34982051 - 34982083
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  34982051 tcaaaatgtgacaattaaaaaggaacggaggta 34982083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 38482810 - 38482778
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  38482810 tcaaaatgtgacaattaaaaaggaacggaggta 38482778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 42077930 - 42077981
Alignment:
Q  114 ttgggttaaaatatatttcgattgcatgttaatggaattgattttacttcta 165  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||| |||||    
T  42077930 ttgggttaaaattaatttcgattgcatgttaattgaattgattttatttcta 42077981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32528352 - 32528312
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  32528352 atgtcaaaatatgacaattaaaaatgaacggaggtagtaat 32528312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5732097 - 5732062
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  5732097 atgtcaaaatgtgacaattaaaaaggaacggaggta 5732062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17896515 - 17896480
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  17896515 atgtcaaaatgtgacaattaaaaaggaacggaggta 17896480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33174026 - 33174061
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33174026 atgtcaaaatgtgacaattaaaaaggaacggaggta 33174061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44820631 - 44820588
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataattga 44  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  44820631 atgtcaaaatatgacagttaaaaatgaacggaggtaatatttga 44820588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32966073 - 32966035
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaata 39  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  32966073 atgttaaaatgtgacaattaaaaaggaacggaggtaata 32966035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36922459 - 36922493
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  36922459 atgtcaaaatgtgacaattaaaaaggaacggaggt 36922493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8382045 - 8382086
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||| ||||||||| ||||||||||| |||||    
T  8382045 atgtcaaaatgtgataattaaaaaggaacggaggtagtaatt 8382086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41675211 - 41675170
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  41675211 atgtcaaaatgtgacaattaaaaaggaacagaggtagtaatt 41675170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8265171 - 8265203
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  8265171 tcaaaatgtgacaattaaaaaagaacggaggta 8265203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31430778 - 31430818
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  31430778 atgtcaaaatgtgacaattaaaaaggaacagaggtagtaat 31430818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 33099856 - 33099824
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  33099856 tcaaaatgtgacaattaaaaaagaacggaggta 33099824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3376301 - 3376263
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaata 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  3376301 atgtcaaaatgtgacaattaaaaaggaacggaggtaata 3376263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44360652 - 44360693
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  44360652 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaatt 44360693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10812418 - 10812453
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  10812418 atgtcaaaatgtgacaattaaaaaggaacggaggta 10812453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11222340 - 11222305
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11222340 atgtcaaaatgtgacaattaaaaaggaacggaggta 11222305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15183025 - 15182990
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  15183025 atgtcaaaatgtgacaattaaaaaggaacggaggta 15182990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36375792 - 36375827
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  36375792 atgtcaaaatgtgacaattaaaaaggaacggaggta 36375827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30264626 - 30264593
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggagg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30264626 atgtcaaaatgtgacaattaaaaaggaacggagg 30264593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 37660152 - 37660119
Alignment:
Q  11 gtgacaattaaaaatgaacggaggtaataattga 44  Q
    ||||||||||||||||||||||||||||| ||||    
T  37660152 gtgacaattaaaaatgaacggaggtaatatttga 37660119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 15893601 - 15893569
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  15893601 tcaaaatgtgacaattaaaaaggaacggaggta 15893569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 36404862 - 36404826
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggtaataa 40  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  36404862 tcaaaatgtgacaattaaaaatgaatggagctaataa 36404826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2673996 - 2673955
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  2673996 atgtcaaaatgtgacaattaaaaaggaacggaggtagtaatt 2673955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 12869914 - 12869882
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||||||||||||    
T  12869914 tcaaaatgtgacaattaaaaatgaacggaggta 12869882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36239659 - 36239691
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||||||||||||||||||||||    
T  36239659 atgtcaaaatgtgacaattaaaaatgaacggag 36239691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4175498 - 4175463
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4175498 atgtcaaaatgtgacaattaaaaaggaacggaggta 4175463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4985193 - 4985158
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4985193 atgtcaaaatgtgacaattaaaaaggaacggaggta 4985158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9127369 - 9127334
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9127369 atgtcaaaatgtgacaattaaaaaggaacggaggta 9127334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16124278 - 16124243
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  16124278 atgtcaaaatgtgacaattaaaaaggaacggaggta 16124243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38910474 - 38910509
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38910474 atgtcaaaatgtgacaattaaaaaggaacggaggta 38910509  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 7579682 - 7579650
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  7579682 tcaaaatgtgacaattaaaaaggaacggaggta 7579650  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17869320 - 17869292
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaac 29  Q
    |||||||||||||||||||||||||||||    
T  17869320 atgtcaaaatgtgacaattaaaaatgaac 17869292  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 39073248 - 39073280
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  39073248 tcaaaatgtgacaattaaaaaggaacggaggta 39073280  T

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Target: scaffold0377 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 11731 - 11787
Alignment:
Q  114 ttgggttaaaatatatttcgattgcatgttaatggaattgattttacttctaagatg 170  Q
    ||||||||||||  |||||||||| |||||||| |||||||||||| ||||| ||||    
T  11731 ttgggttaaaattaatttcgattgtatgttaattgaattgattttatttctatgatg 11787  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29698210 - 29698254
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataattgaa 45  Q
    |||||||||||||||||||||||| ||||||||||| || |||||    
T  29698210 atgtcaaaatgtgacaattaaaaaggaacggaggtattacttgaa 29698254  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 40417459 - 40417503
Alignment:
Q  113 gttgggttaaaatatatttcgattgcatgttaatggaattgattt 157  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  40417459 gttgggttaaaattaatttcgattgcatgttaatgaaattgattt 40417503  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33491166 - 33491131
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33491166 atgtcaaaatgtgacaattaaaaaggaacggaggta 33491131  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40318955 - 40318920
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  40318955 atgttaaaatgtgacaattaaaaatgaacggaggta 40318920  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42671917 - 42671882
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  42671917 atgtcaaaatgtgacaattaaaaaagaacggaggta 42671882  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45101385 - 45101350
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  45101385 atgtcaaaatgtgacaattaaaaaggaacggaggta 45101350  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27992459 - 27992497
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaata 39  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  27992459 atgtcaaaatgtgacaattaaaaaggaacagaggtaata 27992497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34266467 - 34266426
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    ||||||||||||||| |||||||| ||||||||||| |||||    
T  34266467 atgtcaaaatgtgacgattaaaaaggaacggaggtagtaatt 34266426  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54106482 - 54106523
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataatt 42  Q
    |||||||||||| ||||||||||| ||||||||||| |||||    
T  54106482 atgtcaaaatgtaacaattaaaaaggaacggaggtagtaatt 54106523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24981509 - 24981545
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaa 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  24981509 atgtcaaaatgtgacaattaaaaaagaacggatgtaa 24981545  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 29803870 - 29803902
Alignment:
Q  4 tcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  29803870 tcaaaatgtgacaattaaaaaggaacggaggta 29803902  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49123741 - 49123781
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggtaataat 41  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  49123741 atgtcaaaatgtgactattaaaaaggaacggaggtagtaat 49123781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52627265 - 52627233
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  52627265 atgtcaaaatgtgacaattaaaaaggaacggag 52627233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52663661 - 52663693
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggag 33  Q
    |||||||||| ||||||||||||||||||||||    
T  52663661 atgtcaaaatatgacaattaaaaatgaacggag 52663693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8373 - 8408
Alignment:
Q  1 atgtcaaaatgtgacaattaaaaatgaacggaggta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8373 atgtcaaaatgtgacaattaaaaaggaacggaggta 8408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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