View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_20 (Length: 327)
Name: NF19756_low_20
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 12120625 - 12120936
Alignment:
| Q |
17 |
atatgtagacaacataggaccatgttgaagcattgtnnnnnnnn-tgatgagggaccccaaaggaatactaaatcctccattaatatttggaaactcaag |
115 |
Q |
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| T |
12120625 |
atatgtagacaacataggaccatgttgaagcattgtaaaaaaaaatcatgagggaccccaaaggaatactgaatcctccattaatatttggaaactcaag |
12120724 |
T |
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| Q |
116 |
taggtcagattgcaactaaactttctaatctatctgaagttggagtcttaggcactgctctcaacaactcaataaatgggatgtgcaaattggttatggt |
215 |
Q |
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| T |
12120725 |
taggtcaaattgcaactaaactttctaatctatctgaagctggagtcttaggcactgctctcaacaactcaataaatgggacatgcaaattggttatggt |
12120824 |
T |
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| Q |
216 |
tacaaagagttatgttgaagaggaagaatatagaaaaggaggagaagatacaattgaaagggaaggcttgaagagtacaactgcaaagtcataagtgtcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
12120825 |
tacaaagagttatgttgaagaggaagaatatagaaaaggaggagaagatacaattgaaaggggaggcttgaagagtacagctgcaaagtcataagtgtcg |
12120924 |
T |
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| Q |
316 |
gctccataggac |
327 |
Q |
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||||||||||| |
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| T |
12120925 |
actccataggac |
12120936 |
T |
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