View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19756_low_24 (Length: 308)
Name: NF19756_low_24
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_24 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 10604127 - 10604427
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604127 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
10604226 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10604227 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattataagctttgtggaggaattt |
10604326 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaagcgttggaagcacacnnnnnnncattttcccaggttgatagcagtgatagttggtgtggtgtcttttct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10604327 |
cacagttgcatctaccaccatgctctgtcaagcgttggaagcacacaaaaaatcattttcccaggttgatagcagtgatagttggtgtggtgtcttttct |
10604426 |
T |
|
| Q |
307 |
t |
307 |
Q |
| |
|
| |
|
|
| T |
10604427 |
t |
10604427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 10601230 - 10601521
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||| | |||||| ||||||| |
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|
| T |
10601230 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctggtgttatggagaatatatctggtttagaatacttgaa---- |
10601325 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
10601326 |
--------catgttggaaggagaggtgccaacaaacggtgtctttggaaatgcaaccagagtagcattgattggaaattacaagctttgtggaggaattt |
10601417 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaagcgttggaagcacac--nnnnnnncattttcccaggttgatagcagtgatagttggtgtggtgtctttt |
304 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||| |||||| |||||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
10601418 |
cacagttgcatctaccaccatactatgtaaagcgttggacgcacacaaaaaaaatcattttcccaagttgatggcagtgatagttggtgtggtgtcttct |
10601517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10611085 - 10611316
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| ||||||||||| |||| |||||||||||||| ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
10611085 |
tctcaaaggtcttcgatatttagacctttcaacaaatcaattgtctggatcaattcctgatgttatgcaggatatctcatgtttagaacacttgaatgtt |
10611184 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||| ||||||||||||| || ||||| ||||||||| |||||||| || ||||||||||||| ||||| | |||||||||||||| |||| |
|
|
| T |
10611185 |
tcttttaacatgctggaaggtgaggtcccgacaaatggtgtctttagaaatgcatccaaagtagcaatgattggaaacaataagctttgtggaggtattt |
10611284 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| ||| |||||||| |||||||| || ||||| |
|
|
| T |
10611285 |
ctcagctgcatctagcaccatgccctatcaag |
10611316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 10717759 - 10717543
Alignment:
| Q |
22 |
atatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcctttaacatgttg |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| | | |||||||||||||||||||| |||||||||||| |
|
|
| T |
10717759 |
atatttagacctttcaagaaatcaattgtacggaccaattcctgatgttatgcagaaaatctatggtttagaacacttgaatgtttcttttaacatgttg |
10717660 |
T |
|
| Q |
122 |
gaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcacagttgcatctac |
221 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| ||||||| |||| ||| ||||| ||||| || |||||||||||||| |||||| |||||||||||| |
|
|
| T |
10717659 |
gaaggtgaggtaccaacagatggtgtttttgcaaatgcatcccatatagacatgattggaaactataagctttgtggaggtatttcagagttgcatctac |
10717560 |
T |
|
| Q |
222 |
caccatgctctgtcaag |
238 |
Q |
| |
|
|| ||||| || ||||| |
|
|
| T |
10717559 |
catcatgccctatcaag |
10717543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10580366 - 10580597
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||| |||||| |||| |||||||||| |||||| |||| ||||| |
|
|
| T |
10580366 |
tctcaaaggtctacggtatttagatatttcaagaaataaattgtttggaccaaatcccgatgttatgcaaaatatctctaatttagaatacttagatgtt |
10580465 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| | ||||||||| ||||||||||| ||||||||| || ||||| | || |||||||| || |||| |
|
|
| T |
10580466 |
tcttttaacatgttggaaggtgaggtaccaacagatggtgtctttggaaatgcaaccagagtagcaataattggaaacaataaactttgtggtggtattt |
10580565 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
|| |||| ||||||||||||||| || ||||| |
|
|
| T |
10580566 |
cagagttacatctaccaccatgccctttcaag |
10580597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 11049490 - 11049269
Alignment:
| Q |
8 |
ctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgttt |
107 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||| |||||| ||||||| ||||| | |||||||||| | | ||| ||||||||||||||| |
|
|
| T |
11049490 |
ctcaaaggtcttttatatttagacctttctagaaatcaattttatggatcaattccaaatgttatacagaatatctttggtttaaaacacttgaatgttt |
11049391 |
T |
|
| Q |
108 |
cctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttc |
207 |
Q |
| |
|
| |||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
11049390 |
cttttaacctgttggaaggcgaggtaccaacaaacggtgtctttggaaatgcaacccatgtagcaatgataggaaacaataagctttgtggaggtatttc |
11049291 |
T |
|
| Q |
208 |
acagttgcatctaccaccatgc |
229 |
Q |
| |
|
| | |||||||||||| ||||| |
|
|
| T |
11049290 |
agatttgcatctaccatcatgc |
11049269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 10564402 - 10564633
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||| |||| |||||||||||||| |||| ||||||||| |||||| | ||||||||| |
|
|
| T |
10564402 |
tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatctctgttttagaatatttgaatgtt |
10564501 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||| || || ||| ||| ||||| ||| |||||| ||||||| ||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
10564502 |
tcttttaacatgttggaaggagatgtaccattaaatggtgtatttggaaatgtaacccaaatagaagtgattggaaacaaaaagctttgtggaggtattt |
10564601 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| ||| ||||||||||||||||| || ||||| |
|
|
| T |
10564602 |
cccagctgcatctaccaccatgccctatcaag |
10564633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 10217582 - 10217373
Alignment:
| Q |
8 |
ctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgttt |
107 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||| |||||| ||||||| |||| | |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
10217582 |
ctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctggtttaaaacacttgaatgttt |
10217483 |
T |
|
| Q |
108 |
cctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttc |
207 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||||||| |||||| || || ||| ||||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
10217482 |
cttttaacatgttggaaggggaggtaccaacaaacggtgtctttggaaatgtaa--catgtaacaatgattggaaacaataagctttgtggaggtatttc |
10217385 |
T |
|
| Q |
208 |
acagttgcatct |
219 |
Q |
| |
|
| |||||||||| |
|
|
| T |
10217384 |
agagttgcatct |
10217373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10741533 - 10741302
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||| || ||| ||||||| | || ||| ||||||||||| |
|
|
| T |
10741533 |
tctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgaagagtatctctggtttggaatacttgaatgtt |
10741434 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| |||||| | |||||||| ||||| |||||||| ||||| ||| |||||| | | ||| ||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
10741433 |
tcttttaacttattggaaggagaggtaccaacaaatggtgtatttggaaatgtatctcaaatagaagtgattggaaacaaaaagctttgtggaggtattt |
10741334 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
|| |||||||||||||| ||||| || ||||| |
|
|
| T |
10741333 |
cagagttgcatctaccatcatgccctatcaag |
10741302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10747849 - 10747618
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||| ||||||| ||| ||||||| |||||||||||| ||||| ||| |||||||||||||| |||| ||||||||| |||||| | ||||||||| |
|
|
| T |
10747849 |
tctcgaaggtcttcaacatttagacctttcaagaaatcgattgtctgggtcaattcctgatgttatgcaaaatatctctgttttagaatatttgaatgtt |
10747750 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| ||| ||||| ||| |||||| |||| |||||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
10747749 |
tcttttaacatgttggaaggtgaggtaccaaaaaatggtgtatttggaaatgtaaccaaagtagaattgattggaaacaataagctttgtggaggtattt |
10747650 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| | ||||| ||||||||||| || ||||| |
|
|
| T |
10747649 |
tgctgctgcatttaccaccatgccctatcaag |
10747618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 10763967 - 10763736
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||| |||| ||||| ||| | |||| | ||||||||| |
|
|
| T |
10763967 |
tctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatatctgtttaagaatatttgaatgtt |
10763868 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||| || || |||||||| || || ||| |||||| | ||||| ||| | ||| ||||| | |||||||||||||| |||| |
|
|
| T |
10763867 |
tcttttaacatgttggaaggcgaagtaccaacaaatggcgtatttggaaatgtatcccaaatagaagtgactggaaacaagaagctttgtggaggtattt |
10763768 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| | | | ||||||||| ||||| |||||||| |
|
|
| T |
10763767 |
cccggctacatctaccatcatgccctgtcaag |
10763736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 7192388 - 7192531
Alignment:
| Q |
15 |
gtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcctttaa |
114 |
Q |
| |
|
|||| ||||||||||| | |||||||||| |||||||||||||||||| ||||| | |||||||| || |||||||||||||||||||| || || |
|
|
| T |
7192388 |
gtcttcaatatttagacctgtcaagaaatcggttgtatggaccaattcctaatgttctacagaatatatcagttttagaacacttgaatgtttctttcaa |
7192487 |
T |
|
| Q |
115 |
catgttggaaggtgaggtgccaacaaacggtgtctttcgaaatg |
158 |
Q |
| |
|
|||||||||||| ||||| |||||| | ||||||||| |||||| |
|
|
| T |
7192488 |
catgttggaaggcgaggtaccaacagaaggtgtctttggaaatg |
7192531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 10589261 - 10589039
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||||| |||| |||| |||||||| |||||||||||| | | ||||| |||| ||||| |
|
|
| T |
10589261 |
tctcaaaggtcttcaatatttagacatgtcaagaaatcagttgtctggatcaattcctacaagtttgcagaatattgttttcctagaatacttcaatgta |
10589162 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| || |||||||||||||||||||| |||| || |||||||||| |||||||| | |||||||||| ||||| | ||||||||||||||| ||| |
|
|
| T |
10589161 |
tctttcaacatgttggaaggtgaggttccaatgaaaggtgtctttcaaaatgcaagcaggttagcaatgattggaaacaataagctttgtggaggagttt |
10589062 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgc |
229 |
Q |
| |
|
| || |||||||||| |||||| |
|
|
| T |
10589061 |
tagagctgcatctaccgccatgc |
10589039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 10558301 - 10558447
Alignment:
| Q |
13 |
aggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttccttt |
112 |
Q |
| |
|
|||||| | ||||||||| || |||||||||||||||| |||| |||||||| | || |||| ||||| ||| | |||||||||||||| ||||| ||| |
|
|
| T |
10558301 |
aggtcttcgatatttagacatgtcaagaaatcaattgtctggatcaattcctaacattctgcaaaatatttctcgtttagaacacttgaacgtttcattt |
10558400 |
T |
|
| Q |
113 |
aacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgc |
159 |
Q |
| |
|
||||||||||| || ||||| |||| | | ||||||||| ||||||| |
|
|
| T |
10558401 |
aacatgttggatggagaggttccaaaagaaggtgtctttagaaatgc |
10558447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 10653029 - 10652914
Alignment:
| Q |
11 |
aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct |
110 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||| ||||||||||||||||| ||||| | || | ||| || |||||||||||||||||||| | |
|
|
| T |
10653029 |
aaaggtcttcaatatttagacttgtcaagaaatcggttgtatggaccaattccaaatgttctacaaagtatatcagttttagaacacttgaatgtttctt |
10652930 |
T |
|
| Q |
111 |
ttaacatgttggaagg |
126 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
10652929 |
tcaacatgttggaagg |
10652914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 19606693 - 19606477
Alignment:
| Q |
13 |
aggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttccttt |
112 |
Q |
| |
|
|||||| | ||||||||| | |||||||||| ||| |||| |||||||| |||| |||| ||||| ||| |||||| ||||||||||||| ||| |
|
|
| T |
19606693 |
aggtcttcgatatttagacctatcaagaaatcggttgactggatcaattcctagtgttctgcaaaatatttctgttttagaatacttgaatgtttctttt |
19606594 |
T |
|
| Q |
113 |
aacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcacagt |
212 |
Q |
| |
|
||||||||||| || ||||| || | | | ||||||||| ||||||| | | ||||| ||| ||| || | |||||||||||||| ||||| || |
|
|
| T |
19606593 |
aacatgttggatggagaggttcctaaagaaggtgtctttggaaatgctagtgcattagcagtgaccgggaacaataagctttgtggaggtatttcgcatc |
19606494 |
T |
|
| Q |
213 |
tgcatctaccaccatgc |
229 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
19606493 |
tgcacctaccaccatgc |
19606477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 10550349 - 10550393
Alignment:
| Q |
188 |
aagctttgtggaggaatttcacagttgcatctaccaccatgctct |
232 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
10550349 |
aagctttgtggaggaattttagagttgcatctaccgccatgctct |
10550393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 10660915 - 10660768
Alignment:
| Q |
11 |
aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct |
110 |
Q |
| |
|
|||||||| |||||| |||| | ||| |||||| ||||| |||||| ||||| ||||| | |||||||| || ||| ||||||||||||| || | |
|
|
| T |
10660915 |
aaaggtcttcaatatctagacttgtcaggaaatcgattgtctggaccgattccaaatgttctacagaatatatcagttttaaaacacttgaatgtatctt |
10660816 |
T |
|
| Q |
111 |
ttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatg |
158 |
Q |
| |
|
| |||||||||||||| ||||| |||| | ||||||||| |||||| |
|
|
| T |
10660815 |
tcaacatgttggaaggcgaggtaccaatggaaggtgtctttggaaatg |
10660768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 10763706 - 10763666
Alignment:
| Q |
268 |
caggttgatagcagtgatagttggtgtggtgtcttttcttc |
308 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
10763706 |
caggttgatagcagtgatagttagcgtggtttcttttcttc |
10763666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12931654 - 12931885
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||| |||| |||||||||||| | |||| ||||||||| |||||| | ||||||||| |
|
|
| T |
12931654 |
tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagaatatttgaatgtt |
12931753 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||| ||||| || ||||| ||||| ||| |||||||||||||| ||| |||| ||||| | |||||||||||||| |||| |
|
|
| T |
12931754 |
tcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagacttgattggaaacaaaaagctttgtggaggtattt |
12931853 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| || ||||||||||||||||| || ||||| |
|
|
| T |
12931854 |
cccacctgcatctaccaccatgccctatcaag |
12931885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12957453 - 12957684
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||| | |||| ||||||||| |||||| | ||||||||| |
|
|
| T |
12957453 |
tctcaaaggtcttcaatatttagacgtttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagaatatttgaatgtt |
12957552 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| |||||||| |||||||| ||||| || ||||| ||||| ||| ||||||||| |||| ||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
12957553 |
tcttttaacatattggaaggagaggtaccgacaaatggtgtatttggaaatgcaagccaaatagaagtgattggaaacaaaaagctttgtggaggtattt |
12957652 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| || ||||||||||||||||| || ||||| |
|
|
| T |
12957653 |
cccatctgcatctaccaccatgccctatcaag |
12957684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 12906565 - 12906796
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||| |||| |||||||||||| | |||| |||||||| || ||| | || |||||| |
|
|
| T |
12906565 |
tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatattttaatgtt |
12906664 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||| ||||| || ||||| ||| | ||| ||||| |||||||| ||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
12906665 |
tcttttaacatgttggaaggagaggtaccgacaaaaggtttatttggaaattcaacccaaatagaattgattggaaacaaaaagctttgtggaggcattt |
12906764 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| || |||||||||||||||||||| ||||| |
|
|
| T |
12906765 |
cccacctgcatctaccaccatgctctatcaag |
12906796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 12948019 - 12948241
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||| |||| |||||||||||| | |||| ||||||||| ||||| | ||||||||| |
|
|
| T |
12948019 |
tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctctgttttagagtatttgaatgtt |
12948118 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||| ||| ||| | || ||||| ||||| ||| |||||||||||||| ||| | |||| ||||| | ||||| |||||||| |||| |
|
|
| T |
12948119 |
tcttttaacatgttggtaggagagataccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctatgtggaggtattt |
12948218 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgc |
229 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
12948219 |
cccacctgcatctaccaccatgc |
12948241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 12898949 - 12899176
Alignment:
| Q |
11 |
aaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtttcct |
110 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||| | |||| |||||||| || ||| | || |||||||| | |
|
|
| T |
12898949 |
aaaggtcttcaatatttagacttttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatattttaatgtttctt |
12899048 |
T |
|
| Q |
111 |
ttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaatttcaca |
210 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| ||||| ||| |||||||||| ||| ||| | |||| ||||| | ||||| |||||||| ||||| || |
|
|
| T |
12899049 |
ttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacgcaaatagaagtgattggaaacaaaaagctctgtggaggtatttccca |
12899148 |
T |
|
| Q |
211 |
gttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
||||||||||||| ||| || ||||| |
|
|
| T |
12899149 |
cctgcatctaccaccgtgccctatcaag |
12899176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 12899206 - 12899242
Alignment:
| Q |
268 |
caggttgatagcagtgatagttggtgtggtgtctttt |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
12899206 |
caggttgatagcagtgatagttagtgtggtttctttt |
12899242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 17924237 - 17924006
Alignment:
| Q |
7 |
tctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaattcctgatgttttgcagaatatctctagcttagaacacttgaatgtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||||||||||| |||| |||||||||||| | |||| |||||||| || ||| | ||||||||| |
|
|
| T |
17924237 |
tctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcctgatggtatgcaaaatatctcatttttggaatatttgaatgtt |
17924138 |
T |
|
| Q |
107 |
tcctttaacatgttggaaggtgaggtgccaacaaacggtgtctttcgaaatgcaacccaagtagcaatgatcggaaattacaagctttgtggaggaattt |
206 |
Q |
| |
|
|| ||||||||||||||||| ||||| || ||||| ||||| ||| |||||||||||||| ||| | |||| ||||| | |||||||||||||| |||| |
|
|
| T |
17924137 |
tcttttaacatgttggaaggagaggtaccgacaaatggtgtatttggaaatgcaacccaaatagaagtgattggaaacaaaaagctttgtggaggtattt |
17924038 |
T |
|
| Q |
207 |
cacagttgcatctaccaccatgctctgtcaag |
238 |
Q |
| |
|
| || ||||||||||||||||| || ||||| |
|
|
| T |
17924037 |
cccacctgcatctaccaccatgccctatcaag |
17924006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 17923976 - 17923940
Alignment:
| Q |
268 |
caggttgatagcagtgatagttggtgtggtgtctttt |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
17923976 |
caggttgatagcagtgatagttagtgtggtttctttt |
17923940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 31467732 - 31467695
Alignment:
| Q |
271 |
gttgatagcagtgatagttggtgtggtgtcttttcttc |
308 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
31467732 |
gttgatagcagtgatagttagtgtggtttcttttcttc |
31467695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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