View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_29 (Length: 272)
Name: NF19756_low_29
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11263912 - 11264169
Alignment:
| Q |
1 |
acatttcatatatctgtatatgcatcttctactcaaaaatcacaatattttctttaaacggtctaatcatatatctgaaatgacacacacaaaa--caca |
98 |
Q |
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| T |
11263912 |
acatttcatatatctgtatatgcatcttctactcaaaaatcacaatattttctttaaacggtctaatcatatatctgaaatggcacacacaaaaaacaca |
11264011 |
T |
|
| Q |
99 |
ctcaccaagtaaagtccatcctccaattcacttcatcattactgaaataaaacccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacg |
198 |
Q |
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| T |
11264012 |
ctcaccaagtaaagtccatcctccaattcacttcatcattactgaaataaaatccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacg |
11264111 |
T |
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| Q |
199 |
ttctgcgtccctagaagccttaaacgcatcaaatttcttccttgtgttgtcatatttc |
256 |
Q |
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| T |
11264112 |
ttctgcgtccctagaagccttaaacgcatcaaatttcttccttgtgttgtcatatttc |
11264169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 11269375 - 11269497
Alignment:
| Q |
119 |
ctccaattcacttcatcattactgaaataaaacccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacgttctgcgtccctagaagcct |
218 |
Q |
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| T |
11269375 |
ctccaattcacttcatcattactaaaataaaacccatcttgtgtaaccctccaagaacacaacctatgtaagccacaacgttctatgtccctagaagcct |
11269474 |
T |
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| Q |
219 |
taaacgcatcaaatttcttcctt |
241 |
Q |
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||| |||||||| |||||||| |
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| T |
11269475 |
caaatgcatcaaaaatcttcctt |
11269497 |
T |
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