View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_3 (Length: 600)
Name: NF19756_low_3
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 326 - 584
Target Start/End: Original strand, 6164280 - 6164534
Alignment:
| Q |
326 |
atacaaaaattattgataattaaaaagtaaagataacaacaacttgagagactagaccaaaatccatgaaaa-caattaatcaaatctatagaattgcaa |
424 |
Q |
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| T |
6164280 |
atacaaagtttattgataattaaaaagtaaagataacaa-----tgagagactagaccaaaatccaagaaaaacaattaatcaaatctatagaattgcaa |
6164374 |
T |
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| Q |
425 |
agtcatcctatttctaaagaaatcctcgtcaataaaagaatgaacatgatgccaccaatgatcccctaagttaacaacactaaatcttgtaggcttctat |
524 |
Q |
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| T |
6164375 |
agtcatcctatttctaaagaaatcctcgtcaataaaagaatgaacatgatgccaccaatgatcccctaagttaacaacactaaatcttgtaggcttctat |
6164474 |
T |
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| Q |
525 |
acactatctagggaacaacttccatggagcaatatgatgattcttaaaagcgtccataat |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164475 |
acactatctagggaacaacttccatggagcaatatgatgattcttaaaagcgtccataat |
6164534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 6163668 - 6163865
Alignment:
| Q |
12 |
agagataaatagattgatgtgataatgtaataggtttggtcatgtgataggaatatagagataaagattaaaaggagccttgaatgaacctnnnnnnnnt |
111 |
Q |
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| T |
6163668 |
agagataaatagattgatgtgataatgtaataggtttgatcatgtgataggaatat--agataaaaattaaaaggggcgttgaatgaacct-aaaaaaat |
6163764 |
T |
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| Q |
112 |
atgatgttcaaatattgtggttgtattatttaaaacttaaaacatttgattcaaagtttttctccattcacaactttagctctctcatttttattaaaac |
211 |
Q |
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| T |
6163765 |
ataatattcaaatatcgtggttatattatttaaaacttaaaac-----attcaaagtttttctccattcacaactttagctctctcatttttattgaaat |
6163859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 6163984 - 6164093
Alignment:
| Q |
225 |
gttttatagaaagactagtaaggtgcaaaagcatatacgtgaatatatgacatcttaattaagtcgacacttgaggaaacaccaatcccctgcaacacct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6163984 |
gttttatagaaagactagtaaggtgcaaaagcatatacgtgaatatatgacatcttaattaagtcgacacttgaggaaacaccaatccactgcaacacct |
6164083 |
T |
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| Q |
325 |
aatacaaaaa |
334 |
Q |
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|||||||||| |
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| T |
6164084 |
aatacaaaaa |
6164093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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