View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_34 (Length: 245)
Name: NF19756_low_34
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 1030204 - 1030383
Alignment:
| Q |
18 |
aaacaaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaagagattaagtccgcaaaatgnnnnnnncagggta |
116 |
Q |
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| T |
1030204 |
aaacaaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaagagatcaagtccgcaaaatgaaaaaaaca-ggta |
1030301 |
T |
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| Q |
117 |
tcgaaactacaattaaacacttaaaattccat--nnnnnnnngtacttttgttaattcacaaaaatattgttccattttaac |
196 |
Q |
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| T |
1030302 |
tcgaaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaatattgttccattttaac |
1030383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
189 |
attttaaccaccatttacaattttgataatatattttcctat |
230 |
Q |
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| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
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