View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19756_low_5 (Length: 493)

Name: NF19756_low_5
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19756_low_5
NF19756_low_5
[»] chr5 (9 HSPs)
chr5 (223-493)||(3264092-3264359)
chr5 (1-179)||(3263801-3263995)
chr5 (3-48)||(5356303-5356348)
chr5 (1-48)||(8247121-8247168)
chr5 (3-56)||(35395244-35395297)
chr5 (1-49)||(10051784-10051832)
chr5 (4-48)||(22473492-22473536)
chr5 (179-208)||(3264051-3264080)
chr5 (5-49)||(19692782-19692826)
[»] chr3 (5 HSPs)
chr3 (1-49)||(52340125-52340173)
chr3 (1-49)||(7754774-7754822)
chr3 (10-49)||(27968261-27968300)
chr3 (1-47)||(18399165-18399211)
chr3 (4-48)||(30687084-30687128)
[»] chr6 (2 HSPs)
chr6 (4-58)||(35241469-35241523)
chr6 (1-49)||(12383022-12383070)
[»] chr8 (3 HSPs)
chr8 (3-47)||(45368729-45368773)
chr8 (1-48)||(38956938-38956985)
chr8 (1-49)||(31206364-31206412)
[»] chr4 (5 HSPs)
chr4 (1-49)||(49446597-49446645)
chr4 (9-49)||(49769121-49769161)
chr4 (1-39)||(44646539-44646577)
chr4 (3-48)||(42197091-42197136)
chr4 (1-49)||(44647885-44647933)
[»] chr2 (4 HSPs)
chr2 (1-47)||(20683003-20683049)
chr2 (4-48)||(8789913-8789957)
chr2 (1-49)||(18053022-18053069)
chr2 (1-49)||(44941085-44941133)
[»] chr1 (5 HSPs)
chr1 (3-49)||(31745411-31745457)
chr1 (3-49)||(36393540-36393586)
chr1 (5-48)||(12148304-12148347)
chr1 (8-47)||(25302133-25302172)
chr1 (1-48)||(31652676-31652723)
[»] chr7 (3 HSPs)
chr7 (2-49)||(30412924-30412971)
chr7 (3-47)||(47305532-47305576)
chr7 (3-47)||(48137839-48137883)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 223 - 493
Target Start/End: Original strand, 3264092 - 3264359
Alignment:
Q  223 ggatcttaaagcttgctagatagatgctgtggtcgtaaactgtaatgtgtggttgcacgaatatggtgtgcataacatttttattcatctcatctctatt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3264092 ggatcttaaagcttgctagatagatgctgtggtcgtaaactgt--tgtgtggttgcacgaatatggtgtgcatatcatttttattcatctcatctctatt 3264189  T
Q  323 tgatactagtaatatgcatactattatcaaggtgtgtattaactcaaaagctgagcattttctaggaggtacttatagtaattttatttatatacataga 422  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3264190 tgatactagtaatatgcatactattaccaaggtgtgtattaactcaaaagctgagcattttctaggaggtacttatagtaattttatttatatacataga 3264289  T
Q  423 tgtgtgtcctctatatcttaccggcatatgcatgccttgcattcacttaaaagttgctcttttaactacat 493  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3264290 tgtgtgtcctctatatcttactggcatatgcatgccttgcattcactt-aaagttgctcttttaactacat 3264359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3263801 - 3263995
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg----------------ggttaacattttccatattatataagaaaactcta 84  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  3263801 tccgatgcattgattacacatattttaatgataagttaccatttaaagaccttaactagtgcactggttaacattttccatattatataagaaaactcta 3263900  T
Q  85 acacatcttcctagttattttagttttataaactagcccattaattcaatgtgattttatatacaaatattaaactgttttttaggccatattaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3263901 acacatcttcctagttattttagttttataaactagcccattaattcaatgtgattttatatacaaatattaaactgttttttaggccatattaa 3263995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 5356348 - 5356303
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  5356348 cgatgcattgattacacatattttcatgataagttaccatttaaag 5356303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8247121 - 8247168
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||    
T  8247121 tccgatgcattgattatacaacttttcatgataagttaccatttaaag 8247168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 35395244 - 35395297
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaaggggttaac 56  Q
    |||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||    
T  35395244 cgatgcattgattacacatattttcatgataagttgccattaaaaggtgttaac 35395297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10051784 - 10051832
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    ||||||||||||||||||||  |||| || |||||||||||||||||||    
T  10051784 tccgatgcattgattatacaacttttcataataagttaccatttaaagg 10051832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 22473492 - 22473536
Alignment:
Q  4 gatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||    
T  22473492 gatgcattgattacacatattttcacgataagttaccatttaaag 22473536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 3264051 - 3264080
Alignment:
Q  179 atccaatatgaggatcttaaagcttcgacc 208  Q
    ||||||||||||||||||||||||||||||    
T  3264051 atccaatatgaggatcttaaagcttcgacc 3264080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 19692782 - 19692826
Alignment:
Q  5 atgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||| ||||| ||| |||||||||||| |||||||||    
T  19692782 atgcattgattacacataatttgatgataagttacaatttaaagg 19692826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 52340173 - 52340125
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  52340173 tccgatgcattgattacacatatttttatgataagttaccatttaaagg 52340125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7754822 - 7754774
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  7754822 tccgatgcattgattagacatattttcatgataagttactatttaaagg 7754774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 27968261 - 27968300
Alignment:
Q  10 ttgattatacatattttaatgataagttaccatttaaagg 49  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  27968261 ttgattacacatattttcatgataagttaccatttaaagg 27968300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18399211 - 18399165
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaa 47  Q
    |||||||||||||||| |||  |||| ||||||||||||||||||||    
T  18399211 tccgatgcattgattacacaacttttcatgataagttaccatttaaa 18399165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 30687128 - 30687084
Alignment:
Q  4 gatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||||||    
T  30687128 gatgcattgattacacatattttcatgataaattatcatttaaag 30687084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 35241469 - 35241523
Alignment:
Q  4 gatgcattgattatacatattttaatgataagttaccatttaaaggggttaacat 58  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||  |||||||||    
T  35241469 gatgcattgattatacatatttttatgataagttaccattttaacaggttaacat 35241523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12383070 - 12383022
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  12383070 tccgatgcattgattatacatatttttatgataaattactatttaaagg 12383022  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 45368773 - 45368729
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaa 47  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||    
T  45368773 cgatgcaatgattatacatattttcatgataagttaccatttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38956938 - 38956985
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  38956938 tccgatgcattgattacacatattttcatgataagttatcatttaaag 38956985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31206364 - 31206412
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||| ||||||||| ||||||| |||| |||||||||    
T  31206364 tccgatgcattgattacacatatttttatgataaattactatttaaagg 31206412  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 49446645 - 49446597
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  49446645 tccgatgcattgattacacatattttcatgataagttactatttaaagg 49446597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 49769161 - 49769121
Alignment:
Q  9 attgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  49769161 attgattacacatatttttatgataagttaccatttaaagg 49769121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44646577 - 44646539
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttac 39  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  44646577 tccgatgcattgattacacatattttcatgataagttac 44646539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 42197091 - 42197136
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    |||| ||||||||| ||||||||| ||||||| |||||||||||||    
T  42197091 cgatacattgattacacatatttttatgataaattaccatttaaag 42197136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44647933 - 44647885
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||| |||||    
T  44647933 tccgatgcattaattacacatattttcatgataagttactattcaaagg 44647885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20683049 - 20683003
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaa 47  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  20683049 tccgatgcattgattacacatatttttatgataagttaccatataaa 20683003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 8789913 - 8789957
Alignment:
Q  4 gatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    ||||||||||||| ||||||||| ||| ||||||||| |||||||    
T  8789913 gatgcattgattacacatattttcatgttaagttaccctttaaag 8789957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18053069 - 18053022
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||||||||| ||| ||||||| ||||| ||||||||    
T  18053069 tccgatgcattgattatacatactttcatgataaattacc-tttaaagg 18053022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44941133 - 44941085
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||| | |||||||  |||||| ||||||||||||||    
T  44941133 tccgatgcattgattacatatattttcctgataaattaccatttaaagg 44941085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 31745457 - 31745411
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||    
T  31745457 cgatgcattgattacacatatttttatgataagttactatttaaagg 31745411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 36393540 - 36393586
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||    
T  36393540 cgatgcattgattacacgtattttcatgataagttaccatttaaagg 36393586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12148347 - 12148304
Alignment:
Q  5 atgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||    
T  12148347 atgcattggttacacatattttcatgataagttaccatttaaag 12148304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 25302133 - 25302172
Alignment:
Q  8 cattgattatacatattttaatgataagttaccatttaaa 47  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  25302133 cattgattacacatattttcatgataagttaccatttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31652676 - 31652723
Alignment:
Q  1 tccgatgcattgattatacatattttaatgataagttaccatttaaag 48  Q
    ||||||||| |||||| ||||||||| |||||| ||||||||||||||    
T  31652676 tccgatgcaatgattacacatattttcatgataggttaccatttaaag 31652723  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30412971 - 30412924
Alignment:
Q  2 ccgatgcattgattatacatattttaatgataagttaccatttaaagg 49  Q
    |||||||||||||||||||||||||  |||||| |||| |||||||||    
T  30412971 ccgatgcattgattatacatattttcgtgataaattactatttaaagg 30412924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 47305576 - 47305532
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaa 47  Q
    |||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  47305576 cgatccatagattacacatattttcatgataagttaccatttaaa 47305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 48137839 - 48137883
Alignment:
Q  3 cgatgcattgattatacatattttaatgataagttaccatttaaa 47  Q
    |||||||||||||| ||||||||| ||||||| |||| |||||||    
T  48137839 cgatgcattgattacacatatttttatgataaattactatttaaa 48137883  T

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