View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_6 (Length: 478)
Name: NF19756_low_6
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 91 - 467
Target Start/End: Complemental strand, 30020599 - 30020233
Alignment:
| Q |
91 |
tatgtgatgagccttttattctagatcatgcaaagagcattagtttcgtagtggtagagatggatgaggaaaacgatacggatttttctaagaaattcca |
190 |
Q |
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| T |
30020599 |
tatgtgatgagccttttattctagatcatgcaaagagcattagtttcgtagtggtagagatggatgaggaaaacgatacgcatttttctaagaaattcca |
30020500 |
T |
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| Q |
191 |
acctgaagcttcctcagaagtcaataaagaatattccacacataatcttgaaattgatttccaagaagaaagtgttgctctttgctcctgatgataacat |
290 |
Q |
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| T |
30020499 |
acccgaagcttcctcagaggtcaataaagaatattccacacataatcttgaaattgatttccaagaagaaagtgttgctctttgctcctgatgataacat |
30020400 |
T |
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| Q |
291 |
agcaatagtgaatggcgctgaacatacataaattgctccgccaacaccaaccaaccattcaggaaggacaaattgtgtactacaagtattctatgatctt |
390 |
Q |
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| T |
30020399 |
agcaatagtgaatggcgctgaacatacataaattgctcc----------accaaccattcaggaaggacaaattgtgtactacaagtattctatgatctt |
30020310 |
T |
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| Q |
391 |
ccctatacaagtttgatacctatatgtgtttctgctaaatgtatgctcacaggaaggtttaaaacacttcacttcat |
467 |
Q |
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| T |
30020309 |
ccctatacaagtttgatacctatatgtgtttctgctaaatgtatgctcacaggaaggtttaaaacacttcacttcat |
30020233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30021010 - 30020946
Alignment:
| Q |
18 |
tatagctatccactgtctggatgtttgggagcctactcttatgtattttaatttagaaatgttta |
82 |
Q |
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| T |
30021010 |
tatagctatccactgtctggatgtttgggagcctactcttatgtattttaattttgaaatattta |
30020946 |
T |
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