View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_7 (Length: 428)
Name: NF19756_low_7
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 19047401 - 19047077
Alignment:
| Q |
20 |
aggaattcagcgttgcttgggaaactgcttatgatgaattggcatatgcaattaagaagacaatgatttagatatgagatcgaaaaataaaataaatttc |
119 |
Q |
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| T |
19047401 |
aggaattcagcgttgcttgggaaactgcttatgatgaattggcatatgcaattaagaagacaatgatttagatatgagatcgaaaaataaaataaatttc |
19047302 |
T |
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| Q |
120 |
cctaaaatattaaacaagttttcaataataattgttttccatccttcaaaaaataataattgttttccaga----ataattagttaagaaccatttgatg |
215 |
Q |
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| T |
19047301 |
cctaaaatattaaacaagttttcaaaaataattgttttccatccttcaaaaaataataattgttttccagaataaataattagttaagaaccatttgatg |
19047202 |
T |
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| Q |
216 |
tattaaggtattttaaaattgtcgaaagacttatgtatgcaaatttcaatatatagtttacagaaag----nnnnnnnnttcaaactaaattgtgtactt |
311 |
Q |
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| T |
19047201 |
tattaaggtattttaaaattgtcgaaagacttatgtatacaaatttcaatatatagtttacagaaagaaaaaaaaaaagttcaaactaaattgtgtactt |
19047102 |
T |
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| Q |
312 |
tgcaaatttgttttgtcttgtggtc |
336 |
Q |
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| T |
19047101 |
tgcaaatttgttttttcttgtggtc |
19047077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 19047042 - 19046966
Alignment:
| Q |
333 |
ggtcattcaaccatacttactcaattattcagctaatttagtcaccaattcaataatcctcttcaattacaattcaa |
409 |
Q |
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| T |
19047042 |
ggtcattcaaccatacttactcaattattcagctaatttagtcaccaattcaataatcctcttcaattacaattcaa |
19046966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 40846226 - 40846194
Alignment:
| Q |
31 |
gttgcttgggaaactgcttatgatgaattggca |
63 |
Q |
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| T |
40846226 |
gttgcttgggaaactgcttatgacgaattggca |
40846194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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