View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19756_low_9 (Length: 420)
Name: NF19756_low_9
Description: NF19756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19756_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 34364263 - 34364090
Alignment:
| Q |
1 |
gtttattgcgggaaccatgtgatatgttattggatcacttcatatgttttcattagagtagttcaacacttttttgtgctggggtg--ggaagagatggt |
98 |
Q |
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| T |
34364263 |
gtttattgtgggaaacatgtgatatgttattggatcacttcatgtgttttcattagagtagttcaacacttttttgtgctggggtgtgggaggagatggt |
34364164 |
T |
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| Q |
99 |
tagagtgatttagtcgaaattgcagtctatgtagtcatggacgatcacacaatcatgtatttgtgatattagtc |
172 |
Q |
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| T |
34364163 |
tagagtgatttagtcgaaattgcattctatgtagtcatggacgatcacacaatcatgtatttgtgatattagtc |
34364090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 34364095 - 34363966
Alignment:
| Q |
275 |
ttagtctcatatttctggtattaatttctagacttttaaaatcctcaccttacattgtgatttttggagaagagtttgttgtgatgtgtcaaatgtgagt |
374 |
Q |
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| T |
34364095 |
ttagtctcatatttctggtattattttctagacttttaaaatcctcaccttacattgtgatttttggagaagagtttgttgtgatgtgtcaaatgtgagt |
34363996 |
T |
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| Q |
375 |
taaagtcctacattagatgaacgaattaag |
404 |
Q |
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| T |
34363995 |
taaagtcctacattagatgaaagaattaag |
34363966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 21868115 - 21868071
Alignment:
| Q |
351 |
tgttgtgatgtgtcaaatgtgagttaaagtcctacattagatgaa |
395 |
Q |
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| T |
21868115 |
tgttgtgatgtgtcaaatgtgagttaaagtcccacattggatgaa |
21868071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 22768679 - 22768639
Alignment:
| Q |
353 |
ttgtgatgtgtcaaatgtgagttaaagtcctacattagatg |
393 |
Q |
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||||||||||| || ||||||||||||||| |||||||||| |
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| T |
22768679 |
ttgtgatgtgttaagtgtgagttaaagtcccacattagatg |
22768639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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