View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_10 (Length: 601)
Name: NF19757_high_10
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 12 - 586
Target Start/End: Original strand, 38919339 - 38919913
Alignment:
| Q |
12 |
caaatattactagaaaattgatttttccaaaacctatttttgattcttctaagcttttcccgcccaaaaatatttcgggatttgaccctagaagtggtat |
111 |
Q |
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| T |
38919339 |
caaatattactagaaaattgatttttccaaaacctatttttgattcttctaagcttttcccgcccaaaaatatttcgggatttgaccctagaagtggtat |
38919438 |
T |
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| Q |
112 |
cgccaaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgag |
211 |
Q |
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| T |
38919439 |
cgccaaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgag |
38919538 |
T |
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| Q |
212 |
gctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaa |
311 |
Q |
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| T |
38919539 |
gctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaa |
38919638 |
T |
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| Q |
312 |
aaatggaaccatcattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagc |
411 |
Q |
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| T |
38919639 |
aaatggaaccaccattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagc |
38919738 |
T |
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| Q |
412 |
gaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgat |
511 |
Q |
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| T |
38919739 |
gaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgat |
38919838 |
T |
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| Q |
512 |
agagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgat |
586 |
Q |
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| T |
38919839 |
agagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgat |
38919913 |
T |
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