View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19757_high_100 (Length: 245)
Name: NF19757_high_100
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_100 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 32598327 - 32598560
Alignment:
| Q |
3 |
gggctttattaccatcttttctgttgaatacttaatatctatcacgttttatttttnnnnnnnn-tattatgtattcaacaccaaagatgataaatacat |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
32598327 |
gggctttattaccatcttttgtgttgaatacttaatatctatcacgttttattttttaaaaaaaatattatgtattcaacacaaaaaatggtaaatacat |
32598426 |
T |
|
| Q |
102 |
gctagatattaagtgcactaaagtggaaaacagaagaacaagcatgaaatatgaagtacaacgaggagaaggagctcattcaagagtctgaatattgtat |
201 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||| || |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
32598427 |
gctagatattaagtgcattaaagtaggaaacagaacaataagcatgaaatatgaagtacaatgaggagaagaagctccttcaagagtctgaacatcgtat |
32598526 |
T |
|
| Q |
202 |
tgtactaatctttttaaggttatttgtcgttgat |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
32598527 |
tgtactaatctttttaacgttatttgtcgttgat |
32598560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 32598990 - 32599084
Alignment:
| Q |
136 |
agaacaagcatgaaatatgaagtacaacgaggagaaggagctcattcaagagtctgaatattgtattgtactaatctttttaaggttatttgtcgttgat |
235 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||| |||||||| ||||||||| |||| || |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
32598990 |
agaacaagcatggaaaatgaagtacaacgaagaggaggagctccttcaagagtttgaa-----catggtactaatctttttaacgttatctgtcattgat |
32599084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University