View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_104 (Length: 237)
Name: NF19757_high_104
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_104 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 3842168 - 3841958
Alignment:
| Q |
13 |
atgccggtgttaaagtaaaatttcggaaaccaacacatgttagaccc--aacatattttccattcctgacctgatctgtacaatttccaaatattagaaa |
110 |
Q |
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| T |
3842168 |
atgccggtgttaa-gtaaaatttcggaaaccaacacatgttagacaccaaacatgttttccattcctgacctaatccgtaccatttccaaatattagaaa |
3842070 |
T |
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| Q |
111 |
agacaaaggaacctggaagtggtttgaaatacatttttgttgaaaaaattataataacgaatggataaataaattgattaattagttaagttggttaatt |
210 |
Q |
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| T |
3842069 |
agacaaaagaacctggaagtggtttgaaattcatttttgttgaaaaagttataaaaacaaatggataaataaattgattaattagttaagttggttaaat |
3841970 |
T |
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| Q |
211 |
accgtattaact |
222 |
Q |
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|||||||||||| |
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| T |
3841969 |
accgtattaact |
3841958 |
T |
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