View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_112 (Length: 218)
Name: NF19757_high_112
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_112 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 138795 - 138727
Alignment:
| Q |
133 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcgcaaccagcactccctt |
201 |
Q |
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| T |
138795 |
aaagagccctccaacccgcagctagccaccacccgcaactctaaaagtcatcacaacaagcactccctt |
138727 |
T |
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Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 138868 - 138833
Alignment:
| Q |
18 |
gaccaaaccgcacatacaaatgaaagcagccgcaga |
53 |
Q |
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| T |
138868 |
gaccaaaccgcacatacaaatgaaagcagctgcaga |
138833 |
T |
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