View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_16 (Length: 573)

Name: NF19757_high_16
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_16
NF19757_high_16
[»] chr1 (2 HSPs)
chr1 (1-566)||(9586952-9587516)
chr1 (47-532)||(9581412-9581900)
[»] chr4 (7 HSPs)
chr4 (327-490)||(532590-532753)
chr4 (143-249)||(553767-553873)
chr4 (69-121)||(532875-532927)
chr4 (61-157)||(1524178-1524274)
chr4 (139-179)||(53760231-53760271)
chr4 (139-178)||(1481722-1481761)
chr4 (453-518)||(53761062-53761127)
[»] chr5 (2 HSPs)
chr5 (69-256)||(32268536-32268723)
chr5 (61-255)||(41900354-41900548)
[»] chr8 (4 HSPs)
chr8 (69-256)||(17642803-17642990)
chr8 (61-175)||(17635516-17635630)
chr8 (440-499)||(18314873-18314932)
chr8 (66-175)||(14004225-14004337)
[»] chr7 (2 HSPs)
chr7 (193-313)||(10615657-10615777)
chr7 (72-179)||(7977951-7978058)
[»] scaffold1155 (1 HSPs)
scaffold1155 (72-179)||(1757-1864)
[»] scaffold0345 (1 HSPs)
scaffold0345 (72-179)||(8352-8459)
[»] scaffold0105 (1 HSPs)
scaffold0105 (72-179)||(30520-30627)
[»] chr3 (3 HSPs)
chr3 (451-497)||(513925-513971)
chr3 (421-490)||(51113407-51113476)
chr3 (139-179)||(51763328-51763368)
[»] chr6 (4 HSPs)
chr6 (445-490)||(6588523-6588568)
chr6 (271-320)||(9412061-9412110)
chr6 (193-329)||(6417020-6417156)
chr6 (364-436)||(9411951-9412023)
[»] chr2 (1 HSPs)
chr2 (445-478)||(32785308-32785341)


Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 9587516 - 9586952
Alignment:
Q  1 tcaccaatggtctcctattttctttggctgtgcctgccttttaccctcttccctctcgcgtctttcaaagattcaccaacctcacctccctcgacctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9587516 tcaccaatggtctcctattttctttggctgtgcctgccttttaccctcttccctctcgcgtctttcaaagattcaccaacctcacctccctcgacctcac 9587417  T
Q  101 gtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgca 200  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9587416 g-gctacaaaggtgacctcaacgagcttctatctcaagtctcttgtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgca 9587318  T
Q  201 attgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgcca 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9587317 attgggttgcatgctttctccttaaagattacaacgttgacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcctcattgcca 9587218  T
Q  301 aatgtttcccttttcttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagc 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9587217 aatgtttccctttacttgaaatacttgacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagc 9587118  T
Q  401 acttttcagactccgcaaaattaatctctctggtcagggctacctcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttcttgaagagacc 500  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9587117 acttttcagactccgcaaaattaatctctctggtcagagctacctcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttcttgaagagacc 9587018  T
Q  501 atcgtatctaactgtgattggagaatgagtgtagggatagagaattctaaatttttgaaggatatt 566  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9587017 atcgtatctaaccgtgattggagaatgagagtagggatagagaattctaaatttttgaaggatatt 9586952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 47 - 532
Target Start/End: Complemental strand, 9581900 - 9581412
Alignment:
Q  47 tcttccctctcgcgtctttcaaagattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgt 146  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||||    
T  9581900 tcttccctctcgcctcttccaaagattcaccaacctcacctccctcgacctcacgtggtacagaggtaacctcaacgagcttctgtatcaagtctcttgt 9581801  T
Q  147 ttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctc 246  Q
    |||||||||||||||||||||||||||||||||   ||||||| |||||| ||   |||  ||| |||||||||| ||||||||||||||||||||||||    
T  9581800 ttcccattgaaactcacatcgctcaatctctcccaccaatcctacattcctgctgatggactgcgagctttctccgtaaagattacaacgttgacatctc 9581701  T
Q  247 tcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaaatacttgacctaagtgaccctttaat 346  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| | || ||||||| |    
T  9581700 tcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaaatacttgacctcaatggccctttatt 9581601  T
Q  347 ttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatctctctggtcagggctacctc 446  Q
    ||||  |||| ||||||||||| ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||| |||| | |||||||    
T  9581600 ttgtatcgacggttgcaatagcattctccatggggtagagactctttcattagcattttccagactccgcaaaattaatctctctcgtcatgactacctc 9581501  T
Q  447 aacaaccaatcgcttttccacttgttcaaaaattgtaatcttcttgaagagaccatcgtatctaactgtgatt---ggagaatgagtgt 532  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||   |||||||||||||    
T  9581500 aacaaccatttgcttttccacttgttcaaaaattgtaatcttcttgaagagactatcatttctaactgtgattttgggagaatgagtgt 9581412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 490
Target Start/End: Complemental strand, 532753 - 532590
Alignment:
Q  327 gacctaagtgaccctttaatttgtgacgacagttgcaatagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatc 426  Q
    ||||||||| |||| |||  ||| |||| | ||| || ||||||||||||||| || ||||||||||| ||| ||||||||| |||||||||  ||||||    
T  532753 gacctaagtaaccccttatcttgcgacggctgttacagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatc 532654  T
Q  427 tctctggtcagggctacctcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttct 490  Q
    | |||  ||| | |||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  532653 tttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttct 532590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 553873 - 553767
Alignment:
Q  143 ttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgaca 242  Q
    |||||| |||||||| |||||||| ||| ||||||||    || ||  ||||||||||| |||||||| ||||||||||  ||| |||||||| |||||     
T  553873 ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc 553774  T
Q  243 tctctca 249  Q
    |||||||    
T  553773 tctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 532927 - 532875
Alignment:
Q  69 agattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaa 121  Q
    ||||||||||||||||||||||| ||||| ||  ||||||| |||||||||||    
T  532927 agattcaccaacctcacctcccttgaccttacaagctacaacggtgacctcaa 532875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 1524178 - 1524274
Alignment:
Q  61 tctttcaaagattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaa 157  Q
    |||| ||||| |||||||||||||| |||||||| |||||||| ||| |  |||| |||||| ||||||| |  ||| ||||| |||| ||||||||    
T  1524178 tcttccaaaggttcaccaacctcacttccctcgatctcacgtggtacgatcgtgatctcaacaagcttctctgccaaatctctcgttttccattgaa 1524274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 53760231 - 53760271
Alignment:
Q  139 tctcttgtttcccattgaaactcacatcgctcaatctctcc 179  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  53760231 tctctcgtttcccattgaaactcacatcactcaatctctcc 53760271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 1481761 - 1481722
Alignment:
Q  139 tctcttgtttcccattgaaactcacatcgctcaatctctc 178  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481761 tctcctgtttcccattgaaactcacatcgctcaatatctc 1481722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 53761062 - 53761127
Alignment:
Q  453 caatcgcttttccacttgttcaaaaattgtaatcttcttgaagagaccatcgtatctaactgtgat 518  Q
    ||||| |||||||||||||| || ||||||||||||||| |||||  |||| | | ||||||||||    
T  53761062 caatcacttttccacttgttgaagaattgtaatcttcttcaagaggtcatcttgtttaactgtgat 53761127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 69 - 256
Target Start/End: Complemental strand, 32268723 - 32268536
Alignment:
Q  69 agattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgc 168  Q
    |||||||||||||||||||||||||||||| |||| | ||| ||| | |||||| ||||||| | |||| ||||| |||| |||||||||||||| || |    
T  32268723 agattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtcac 32268624  T
Q  169 tcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttc 256  Q
    ||||||||||     ||| |  ||||||| |||||||||||||  |||| ||    ||||||||||| ||||| ||||||| ||||||    
T  32268623 tcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaagaagattacaactttgacctctctcacttgttc 32268536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 41900354 - 41900548
Alignment:
Q  61 tctttcaaagattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaact 160  Q
    ||||||| ||||| ||||| |||||||||||| | ||| || ||| | | ||| |||||||| | ||||| | |||| |||||  ||| |||||||||||    
T  41900354 tctttcatagatttaccaatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaact 41900453  T
Q  161 cacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgtt 255  Q
    |||||| ||||| ||||| |  |||  |  ||| |||||| ||||||| | |||||| |||  |||||||||||| ||||| ||||||| |||||    
T  41900454 cacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 256
Target Start/End: Original strand, 17642803 - 17642990
Alignment:
Q  69 agattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaag-tctcttgtttcccattgaaactcacatcg 167  Q
    |||||||||| |||| |||||||||||||  |   ||||||||||||||| ||| ||||| |    |||| |||||||||| |||||||||||||||||     
T  17642803 agattcaccagcctcgcctccctcgacctttcacactacaaaggtgacctaaacaagcttatcaa-caagatctcttgttttccattgaaactcacatca 17642901  T
Q  168 ctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttc 256  Q
    ||||||||||||   ||   |  ||||||| | | |||||| ||||||||||||   || |||||||| ||||| ||||||| ||||||    
T  17642902 ctcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttc 17642990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 17635516 - 17635630
Alignment:
Q  61 tctttcaaagattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaact 160  Q
    ||||||| |||||| |||||||| ||||||||||| || || | |||||||| ||||| ||| ||||||| |   || |||||  ||| |||||||||||    
T  17635516 tctttcatagattctccaacctcgcctccctcgacttctcgggatacaaaggagacctaaacaagcttctctgcgaaatctctccttttccattgaaact 17635615  T
Q  161 cacatcgctcaatct 175  Q
    || ||| ||||||||    
T  17635616 catatcactcaatct 17635630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 18314873 - 18314932
Alignment:
Q  440 ctacctcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttcttgaagagac 499  Q
    |||| ||||| | ||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  18314873 ctacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagac 18314932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 14004337 - 14004225
Alignment:
Q  66 caaagattcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttccca---ttgaaactca 162  Q
    ||||| |||||||| |||||||||||||||||| ||| |||  | ||||||||| | |  |||||  ||||| ||||| | ||||||   || |||||||    
T  14004337 caaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactca 14004238  T
Q  163 catcgctcaatct 175  Q
    |||||||||||||    
T  14004237 catcgctcaatct 14004225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 10615777 - 10615657
Alignment:
Q  193 ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct 292  Q
    ||||||||| |||||| | ||||||||||  |||||||||||| ||||| ||||||| ||||||  |||||  |   |||||||||| |||  |||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagtagtgatctgttcct 10615678  T
Q  293 cattgccaaatgtttcccttt 313  Q
     |||||  |||||||||||||    
T  10615677 tattgcagaatgtttcccttt 10615657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 7978058 - 7977951
Alignment:
Q  72 ttcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgctca 171  Q
    |||| |||||||||||||||| ||||||  ||||||   |||  ||||||| |||||||    ||| | |||||||||||||||||| |||| || ||||    
T  7978058 ttcatcaacctcacctccctcaacctcagatgctacttcggtagcctcaacaagcttctccgccaaatttcttgtttcccattgaaaatcacgtcactca 7977959  T
Q  172 atctctcc 179  Q
    ||||||||    
T  7977958 atctctcc 7977951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 1757 - 1864
Alignment:
Q  72 ttcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgctca 171  Q
    ||||| ||||| ||||||||  ||||| |||| |||||  |||||||||||| ||| ||   | || ||||| ||||||||||||| |||||||| ||||    
T  1757 ttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccattgaacctcacatcactca 1856  T
Q  172 atctctcc 179  Q
    ||||||||    
T  1857 atctctcc 1864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 8459 - 8352
Alignment:
Q  72 ttcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgctca 171  Q
    ||||| ||||| ||||||||  ||||| |||| |||||  |||||||||||| ||| ||   | || ||||| ||||||||||||| |||||||| ||||    
T  8459 ttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccattgaacctcacatcactca 8360  T
Q  172 atctctcc 179  Q
    ||||||||    
T  8359 atctctcc 8352  T

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Target: scaffold0105 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 30520 - 30627
Alignment:
Q  72 ttcaccaacctcacctccctcgacctcacgtgctacaaaggtgacctcaacgagcttctgtctcaagtctcttgtttcccattgaaactcacatcgctca 171  Q
    ||||| ||||| ||||||||  ||||| |||| |||||  |||||||||||| ||| ||   | || ||||| ||||||||||||| |||||||| ||||    
T  30520 ttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccattgaacctcacatcactca 30619  T
Q  172 atctctcc 179  Q
    ||||||||    
T  30620 atctctcc 30627  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 513925 - 513971
Alignment:
Q  451 accaatcgcttttccacttgttcaaaaattgtaatcttcttgaagag 497  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaagag 513971  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 490
Target Start/End: Original strand, 51113407 - 51113476
Alignment:
Q  421 ttaatctctctggtcagggctacctcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttct 490  Q
    ||||||||||| ||||   |||| ||||| |||||| | ||||||||||||||||||||| ||| |||||    
T  51113407 ttaatctctctagtcattactacatcaactaccaattgtttttccacttgttcaaaaattctaagcttct 51113476  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 51763328 - 51763368
Alignment:
Q  139 tctcttgtttcccattgaaactcacatcgctcaatctctcc 179  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  51763328 tctctcgtttcccattgaaactcacatcacttaatctctcc 51763368  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 490
Target Start/End: Original strand, 6588523 - 6588568
Alignment:
Q  445 tcaacaaccaatcgcttttccacttgttcaaaaattgtaatcttct 490  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||||    
T  6588523 tcaacaatcaatcgcttttccacttgttcaacaattgtaagcttct 6588568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 9412110 - 9412061
Alignment:
Q  271 tcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaa 320  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9412110 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 9412061  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 6417156 - 6417020
Alignment:
Q  193 ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct 292  Q
    |||||| || |||||| | ||||||||||  ||||| |||||| ||||| ||||||| ||||||  |||||  |  ||||||  ||| |||  |||||||    
T  6417156 ttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacatcgttaatttcaacggtagtgatctgttcct 6417057  T
Q  293 cattgccaaatgtttcccttttcttgaaatacttgac 329  Q
     |||||  ||||||||||||| ||||||  |||||||    
T  6417056 tattgcagaatgtttccctttgcttgaagaacttgac 6417020  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 9412023 - 9411951
Alignment:
Q  364 atagctttctccatggggttgagactctttcgttagcacttttcagactccgcaaaattaatctctctggtca 436  Q
    ||||||||||  || |||| ||||||||||| ||  ||||||||| ||||  ||| |||||||||||||||||    
T  9412023 atagctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtca 9411951  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 478
Target Start/End: Original strand, 32785308 - 32785341
Alignment:
Q  445 tcaacaaccaatcgcttttccacttgttcaaaaa 478  Q
    ||||||| ||||||||||||||||||||||||||    
T  32785308 tcaacaatcaatcgcttttccacttgttcaaaaa 32785341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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