View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_21 (Length: 548)
Name: NF19757_high_21
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Complemental strand, 33538720 - 33538203
Alignment:
| Q |
20 |
ctgtcattgttgctcaccttaaagttctccatttcataagtttggttcaaaaacagctgaggtttaaatgtattgagaaattctttagggagcgtaatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
33538720 |
ctgtcattgttgctcaccttaaagttctccatttcataagtttggttcaaaaacagctgaggtttaaatgcattgagaaattctttcgggagcgtaatat |
33538621 |
T |
|
| Q |
120 |
gaattacatcagcctgtatggttgtaaattttgaagtagtcagtaaagcgatattgaaatgaagttattgaaagaatgaaatagactgaaaagaaaagca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33538620 |
gaattacatcagcctgtatggttgtaaattttgaagtagtcagtaaagcgatattgaaatgaagttattgaaagaatgaaatagactgaaaagaaaagcc |
33538521 |
T |
|
| Q |
220 |
tacttcagcatccttaatgatcatttcaagactttcacttttgtatttgccaataaccggccaaagatcaacaatcctcacagcaaggacccacacatct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33538520 |
tacttcagcatccttaatgatcatttcaagactttcacttttgtatttgccaataaccggccaaagatcaacaatcctcacagcaaggacccacacatct |
33538421 |
T |
|
| Q |
320 |
ttactctgatcaatgtctgttatcttatcaaaaccacgagcgacctcttcatcatcttccattcttcatagataaacaacaaaattaagtccataataaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33538420 |
ttactctgatcaatgtctgttatcttatcaaaaccacgagcgacctcttcatcatcttccattcttcatagataaacaacaaaattaagtccataataaa |
33538321 |
T |
|
| Q |
420 |
acaataaccttgtattgacagttctactaatgctataaacattaaaatggctaggctggnnnnnnnngttaaccaaaccgtttgattaagatggctaggc |
519 |
Q |
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| T |
33538320 |
acaataaccttgtattgacagttctactaatgctataaacataaaaatggctaggctggttttttttgttaaccaaaccgtttgattaagatggctaggc |
33538221 |
T |
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| Q |
520 |
atgtagattattattctt |
537 |
Q |
| |
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|||||||||||||||||| |
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| T |
33538220 |
atgtagattattattctt |
33538203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 46404842 - 46404880
Alignment:
| Q |
499 |
gtttgattaagatggctaggcatgtagattattattctt |
537 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||| |
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| T |
46404842 |
gtttgattaaaatggctaggcatgtatattattattctt |
46404880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 23971581 - 23971963
Alignment:
| Q |
21 |
tgtcattgttgctcaccttaaagttctccatttcataagtttggttcaaaaacagctgaggtttaaatgtattgagaaattctttagggagcgtaatatg |
120 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
23971581 |
tgtcattgttgctaaccttaaagttctccatttcataagtttggttcaaaatcagtcgaggtttaaatttattgagttattctttagggagcgtaatatg |
23971680 |
T |
|
| Q |
121 |
aattacatcagcctgtatggttgtaaattttgaagtagtcagtaaagcgatattgaaatgaagttattgaaagaatgaaatagactgaaaagaaaagcat |
220 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||| |||| ||||||| |||||||||| ||| |
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| T |
23971681 |
aattacatcaccctgtatggttgtaaatttgtaagtagtcagtaaagtgttattgaaatgaacttattgaatgaatcaaatagatagaaaagaaaaccat |
23971780 |
T |
|
| Q |
221 |
acttcagcatccttaatgatcatttcaagactttcacttttgtatttgccaataaccggccaaagatcaacaatcctcacagcaaggacccacacatctt |
320 |
Q |
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|| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23971781 |
acctcaacatccttaacgatcatttcaagatgttcacttttgtatttgccaataactggccaaagatcaacaatcctcacaacaaggacccacacatctt |
23971880 |
T |
|
| Q |
321 |
tactctgatcaatgtctgttatcttatcaaaaccacgagcgacctcttcatcatcttccattcttcatagataaacaacaaaa |
403 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
23971881 |
tactctgatcaatgtctattatcttatcaaaaccacgagcgacttcttcatcatcttccattcttcacagataaacaacaaaa |
23971963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 23972409 - 23972459
Alignment:
| Q |
487 |
gttaaccaaaccgtttgattaagatggctaggcatgtagattattattctt |
537 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
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| T |
23972409 |
gttaaccaaactatttgattaaaatggctaggcatgtatattattattctt |
23972459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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