View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_24 (Length: 500)
Name: NF19757_high_24
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Complemental strand, 44967837 - 44967372
Alignment:
| Q |
9 |
gataattctggg-catagttaaattggtttaatcggttttgataatgctcttctaccaagtcgaaccaaagttctaaaatcatttaatgggaaatttggg |
107 |
Q |
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| T |
44967837 |
gatagttctgggtcatagttaaattggtttaatcggttttgataatgctcttctaccaagtcgaaccaaaattctaaaatcatttattgggaagtttgag |
44967738 |
T |
|
| Q |
108 |
gtagtggaaaataacaacaaataaaggttttaaaagcataagagagtgagatgtcatacctctatcctaaattttcctcattcataattgatgtgttaca |
207 |
Q |
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| T |
44967737 |
atagtcaaaaataacaacgaataaaggttttaaaagcataagagagtgagatgtcatacctctatcctaaattttcctcattcataattgatgtgc---- |
44967642 |
T |
|
| Q |
208 |
cttgaattcaacaatttctccatcatgtacgaatctctcacatcctatatttgcaatgttgttaacgttaatagaagaacatgttgtctccaaactagat |
307 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
44967641 |
-----attcaacaatttctccattatgtatgaatctctcacatcctatatttgcaatgtcgctaacgttaatagaagaacatgt---ctccaaactagat |
44967550 |
T |
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| Q |
308 |
tgtcaaacaaactttcgatacaatgatccaatataatgatacacttcctctctcccacaaaaccaaacaagagatttatactactactcattaaatagtc |
407 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44967549 |
tgtcaaacaaactttcgatacaatgatccaatatcatgataaacttcctctctcccacaaaaccaaacaagagatttatactactactcattaaatagtc |
44967450 |
T |
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| Q |
408 |
aaactgcactataatgagtgcatacgtattaatgaccatatgcaatataactagggggaccacaacacctagtttgtg |
485 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44967449 |
aaactgcactataatgagtgcatacgtattaatcaccatatgcaatataactagggggaccacaacacctagtttgtg |
44967372 |
T |
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