View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_25 (Length: 493)
Name: NF19757_high_25
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 479
Target Start/End: Complemental strand, 43290506 - 43290040
Alignment:
| Q |
13 |
acaaacaactcattttgtttaaataggaaactaaattaacagccacagtttcannnnnnnncttcctcaaattaattactcttgatcctcttaacaaacc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43290506 |
acaaacaactcattttgtttaaataggaaactaaattaacagccacagtttcattttttttcttcctcaaattaattactcttgatcctcttaacaaacc |
43290407 |
T |
|
| Q |
113 |
ttgaaactcaaaaacaatgttaccaaaaccttttgagaaactaactaacctagattcagtttcttgaagctcttttaaattcttaccgaaaccagttaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290406 |
ttgaaactcaaaaacaatgttaccaaaaccttttgagaaactaactaacctagattcagtttcttgaagctcttttaaattcttaccgaaaccagttaat |
43290307 |
T |
|
| Q |
213 |
ctgaaagagattctgttgccacttgttgctttttctgaaagtgattgaatcagtgaaggccattgaaaaccatatgaagcatcaaaatcaataacatgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290306 |
ctgaaagagattctgttgccacttgttgctttttctgaaagtgattgaatcagtgaaggccattgaaaaccatatgaagcatcaaaatcaataacatgaa |
43290207 |
T |
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| Q |
313 |
tagaacggttatttttctcttcttctttttcaaaggcttccaagatagcttgatttgcagtgaaatgagcaaattggaaatagggtgaaactctgtagag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290206 |
tagaacggttatttttctcttcttctttttcaaaggcttccaagatagcttgatttgcagtgaaatgagcaaattggaaatagggtgaaactctgtagag |
43290107 |
T |
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| Q |
413 |
atctgtgaatgcgagaaactcttcgtcgattgttggttcttccatcaacatttcatagaatggtgat |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43290106 |
atctgtgaatgcgagaaactcttcgtcgattgttggttcttccatcaacatttcatagaatggtgat |
43290040 |
T |
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