View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_27 (Length: 470)
Name: NF19757_high_27
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 40886894 - 40886455
Alignment:
| Q |
12 |
catagggtggttgcatggtattttcttggaactgcaaaattaaatttattaagtagaacgagagaagtataatta---gtacctgatcaaccaaactgca |
108 |
Q |
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| T |
40886894 |
catagggtggttgcatggtattttcttcgaactgcaaaattaaatttattaagtagaatgagagaagtataattattagtacctgatcaaccaaactgca |
40886795 |
T |
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| Q |
109 |
aacaatacctcctaaaaaagaagataaagaagagggttcaaaaatcattcatattatgaaagaagtataattagtacttgatcaacaaaatactaaattg |
208 |
Q |
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| T |
40886794 |
aacaatacctcctaaaaaagaagataaagaagagggttcaaaaatcattcatattatgaaagaagtataattagtacttgatcaacaaaatactaaattg |
40886695 |
T |
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| Q |
209 |
atcaaaaattcaaatccacttattagcattacccaatcaagcccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaa |
308 |
Q |
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| T |
40886694 |
atcaaaaactcaaatccacttattagcattacccaatcaagcccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaa |
40886595 |
T |
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| Q |
309 |
tcccaactccaagacctctccaccatgttctcatctcataaatactac---acgatttttgaagcgaaatagcaaacaatctaggaaaaacttctctaat |
405 |
Q |
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| T |
40886594 |
tcccaactccaagacctctccaccatgttctcatctcataaatactacaatatgatttttgaagcgacatagcaaacaatctaggaaaaacttctctaat |
40886495 |
T |
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| Q |
406 |
cgtaatactcgataacctaaaatcatgcaaaaggaagtag |
445 |
Q |
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| T |
40886494 |
cgtaatactcgataacctaaaatcatgcaaaaggaagtag |
40886455 |
T |
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Back To:
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 21418549 - 21418476
Alignment:
| Q |
250 |
cccaaagatcatcaaatatatgttttttccattcaaagaaatttctccgccatttcaaatcccaactccaagacc |
324 |
Q |
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| T |
21418549 |
cccaaagatcttcaaataaat-tttttcccattcaaaaagattcctccgccacttcaaatcccaactccaagacc |
21418476 |
T |
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