View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_30 (Length: 457)

Name: NF19757_high_30
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_30
NF19757_high_30
[»] chr1 (1 HSPs)
chr1 (13-457)||(48698957-48699403)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 48699403 - 48698957
Alignment:
Q  13 aagaaaatttgagatgtggaaggtaatattattgaatagcaaatcatacatgtaaagagcaataatattgtgtaagaatggaatctcttaatcatatgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699403 aagaaaatttgagatgtggaaggtaatattattgaatagcaaatcatacatttaaagagcaataatattgtgtaagaatggaatctcttaatcatatgat 48699304  T
Q  113 a--ggcttcacaagaatttaggggagagaagaaatgattaatgcttctataatttgccgaaagagaaattacatgcttgtgtaaggcaattgatccttat 210  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48699303 ataggcttcacaagaatttaggggagagaagaaatgattaatgcttctataatttgccgaaagagaaattacatggttgtgtaaggcaattgatccttat 48699204  T
Q  211 agaatcctaacaaattctgcaatgttccctctaataatagaaattcatgactaactagtaaaactaaaaatagtttggaactagtgagtcaccattactt 310  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699203 agaatcctaacaaattctgcaatattccctctaataatagaaattcatgactaactagtaaaactaaaaatagtttggaactagtgagtcaccattactt 48699104  T
Q  311 cagtagtacatatacataatcctctcatcttttaggctttaaaatggnnnnnnngggctttgcttgtgtggatcgtttcagtcactttaggctgaatcaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  48699103 cagtagtacatatacataatcctctcatcttttaggctttaaaatggtttttttgggctttgcttgtgtggatcgtttcagtcactttaggctgaatcaa 48699004  T
Q  411 catcatttttccagattttaaaatttaaatatgtaaattgaaaaata 457  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  48699003 catcattttttcagattttaaaatttaaatatgtaaattgaaaaata 48698957  T

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