View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_4 (Length: 787)

Name: NF19757_high_4
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_4
NF19757_high_4
[»] chr2 (5 HSPs)
chr2 (23-780)||(13715194-13715949)
chr2 (439-763)||(4848480-4848802)
chr2 (194-350)||(11511160-11511316)
chr2 (209-351)||(7068492-7068635)
chr2 (439-590)||(14659002-14659154)
[»] chr3 (3 HSPs)
chr3 (439-779)||(45907960-45908296)
chr3 (195-365)||(54103189-54103359)
chr3 (224-297)||(40283671-40283744)
[»] chr8 (5 HSPs)
chr8 (613-780)||(22917219-22917379)
chr8 (446-599)||(4784994-4785148)
chr8 (645-780)||(4784136-4784274)
chr8 (438-599)||(22917026-22917186)
chr8 (713-748)||(5320150-5320185)
[»] chr5 (2 HSPs)
chr5 (442-599)||(39773695-39773853)
chr5 (668-762)||(39773556-39773650)
[»] chr6 (2 HSPs)
chr6 (193-364)||(26353346-26353504)
chr6 (248-297)||(19138395-19138444)
[»] chr4 (3 HSPs)
chr4 (439-590)||(6127068-6127220)
chr4 (494-588)||(44398274-44398368)
chr4 (444-579)||(43810833-43810969)
[»] chr1 (1 HSPs)
chr1 (202-296)||(36686618-36686712)
[»] chr7 (1 HSPs)
chr7 (224-297)||(23015165-23015238)


Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 23 - 780
Target Start/End: Complemental strand, 13715949 - 13715194
Alignment:
Q  23 gacatggaaagattatacaccccgacaacaaagtggttttaggctataactgtgtttacgggtgcttacttacattagtgattttaatcattacttgata 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13715949 gacatggaaagattatacaccccgacaacaaagtggttttaggctataactctgtttacgggtgcttacttacattagtgattttaatcattacttgata 13715850  T
Q  123 tgatgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttggtgtactgttcttagttattctaagcatgtttttgggatagagtttagaata 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  13715849 tgatgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaagcatgtttttggcatagagtttagaata 13715750  T
Q  223 ccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtgtaaacgtgatacattaccgtagttt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  13715749 ccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtgtaaacgcgatacattaccgtggttt 13715650  T
Q  323 tctatagaacgtggtttgtcaaaggcaatgacaaacatgctataagtctataaaaacctcattgtaaatattattcagcacacatcaaattgaacaaatc 422  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13715649 tctatagaacgtggtttgtcaaacgcaatggcaaacatgctataagtttataaaaacctcattgtaaatattattcaacacacatcaaattgaacaaatc 13715550  T
Q  423 tttatatatctttttgggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaat 521  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||       ||||||||||||||||||||||||||||    
T  13715549 tttatatatctttttgggtggcatttagcttggacgagtagaagaaatggtccatgatgcaccaatttttttaatgtttagattagacaatccaccaaat 13715450  T
Q  522 cttatcatactctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaata 621  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  13715449 cttatcatactctacccacaccctatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacttttttcatttttatatcaata 13715350  T
Q  622 ctattcaacaactcccctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtca 721  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13715349 ctattcaacaactcccctac---agttccattgaaatggtgatggttttaaataagtagtcataccaatatatagctaaatcacataattattatggtca 13715253  T
Q  722 ttgattgaaactgatcttaagcacatacataagaacttttttatagattattcatctca 780  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  13715252 ttgattgaaactgatcttaagtacatacacaagaacttttttatggattattcatctca 13715194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 439 - 763
Target Start/End: Original strand, 4848480 - 4848802
Alignment:
Q  439 ggtggcatttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 537  Q
    |||||||||||| |||||| ||||||||||||||   |||||||| |||       |||||||||||||| ||||||| |||||||||||||||||||||    
T  4848480 ggtggcatttagtttggactagttgaagaattggtgtatgatggatcaatttttttaatgtttagattaggcaatccatcaaatcttatcatactctacc 4848579  T
Q  538 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 637  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||    
T  4848580 cagactctatctaagccatcaccaactctatctccttcattgctctttctctctcttggtactttttttatttttatatcaatattattcaacaactccc 4848679  T
Q  638 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 737  Q
    || |||| |   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848680 ctgcagttg---cattgaaatggtgatggtttcaaataagcagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 4848776  T
Q  738 ttaagcacatacataagaactttttt 763  Q
    ||||||||||||| ||||||||||||    
T  4848777 ttaagcacatacacaagaactttttt 4848802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 194 - 350
Target Start/End: Complemental strand, 11511316 - 11511160
Alignment:
Q  194 agcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttt 293  Q
    ||||||| |||||  ||||||||| || |||||||||| ||||||| || ||| ||||||||| ||||||||| |||||||||||| |||||||||||||    
T  11511316 agcatgtgtttggtgtagagtttacaacaccaaaagcacggctggcatgattatcaaagcaaaactgccgtgattttattaagctagcatttggagcttt 11511217  T
Q  294 tgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaa 350  Q
    || |  ||||||||| ||| |||| |||||| ||| || |||||||| |||| ||||    
T  11511216 tgcgccaacgtgataaattgccgtggttttccataaaatgtggtttgacaaacgcaa 11511160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 7068635 - 7068492
Alignment:
Q  209 tagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagct-accatttggagcttttgtgtaaacgtgat 307  Q
    ||||||||| || |||||||||| || ||  ||| ||| ||||||||| |||  |||||||||||||||| | ||||| |||||||||||  ||||||||    
T  7068635 tagagtttacaacaccaaaagcacggttgatgtgattatcaaagcaaaactgttgtgactttattaagcttaacatttagagcttttgtgccaacgtgat 7068536  T
Q  308 acattaccgtagttttctatagaacgtggtttgtcaaaggcaat 351  Q
      ||||||||||||||||||| ||||||||||| |||| |||||    
T  7068535 gaattaccgtagttttctataaaacgtggtttgacaaacgcaat 7068492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 439 - 590
Target Start/End: Original strand, 14659002 - 14659154
Alignment:
Q  439 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 537  Q
    |||| |||||||||||||  | |||||||||||| |||||||||| |||       |||||||||||||||| |||||  |||||||||||||||||| |    
T  14659002 ggtgccatttagcttggatcaattgaagaattggtccatgatggatcaatttttttaatgtttagattagactatccatgaaatcttatcatactctatc 14659101  T
Q  538 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 590  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  14659102 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 14659154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 439 - 779
Target Start/End: Complemental strand, 45908296 - 45907960
Alignment:
Q  439 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 537  Q
    ||||| ||||||||||||| ||||||| |||| | ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  45908296 ggtggtatttagcttggaccagttgaaaaatttgtccatgatggaccaatttttttaatgtttagattagacaatccaccaaatcttatcatactctacc 45908197  T
Q  538 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtacnnnnnnnnnnnnnatatcaatactattcaacaactccc 637  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  45908196 cacaccctatctaagccatcaccaactctatc--cttcattgctctttctctctcttggtacttttttcatttttatatcaatactattcaacaactccc 45908099  T
Q  638 ctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 737  Q
    || ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45908098 ctgcagt---tccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatc 45908002  T
Q  738 ttaagcacatacataagaacttttttatagattattcatctc 779  Q
    |||||||||| || |||||||||||||| |||||||| ||||    
T  45908001 ttaagcacattcacaagaacttttttatggattattcctctc 45907960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 195 - 365
Target Start/End: Original strand, 54103189 - 54103359
Alignment:
Q  195 gcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctttt 294  Q
    |||||| ||||| |||||||||| || |||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  54103189 gcatgtgtttggtatagagtttacaacaccaaaagcacggctgacgtggttatcaaagcaaaactgccgtgactttattaagctaccatttggagctttt 54103288  T
Q  295 gtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgctat 365  Q
    | |  ||||||||||||| |||| |||||||||| ||||||||||| |||| |||||| ||||||||||||    
T  54103289 gcgccaacgtgatacattgccgttgttttctataaaacgtggtttgacaaacgcaatggcaaacatgctat 54103359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 40283744 - 40283671
Alignment:
Q  224 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 297  Q
    |||||||| |||| ||||| ||| ||||||||| ||  ||||||||||| |||||| | |||||||||||||||    
T  40283744 caaaagcacggcttgcgtgattatcaaagcaaaactatcgtgactttatgaagctagcctttggagcttttgtg 40283671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 613 - 780
Target Start/End: Original strand, 22917219 - 22917379
Alignment:
Q  613 atatcaatactattcaacaactcccctacagtagttccattgaaatggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 712  Q
    ||||||||||||||||||||||||| |   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22917219 atatcaatactattcaacaactcccat---gtagttccattgaaagggtgatggtttcaaataagtagtcataccaatatatagctaaatcacataatta 22917315  T
Q  713 ttatggtcattgattgaaactgatcttaagcacatacataagaacttttttatagattattcatctca 780  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||| |||||    
T  22917316 ttatggtcattgattgaaactgatcttaagc----acataagaacttttttatggattattcctctca 22917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 446 - 599
Target Start/End: Complemental strand, 4785148 - 4784994
Alignment:
Q  446 tttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacacct 544  Q
    |||||||||||| |||||||||||||| ||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||      
T  4785148 tttagcttggaccagttgaagaattggtccatgatggaccaatttttttaatgtgtagattagacaatccaccaaatcttatcatactctacccacactc 4785049  T
Q  545 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4785048 tatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 4784994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 645 - 780
Target Start/End: Complemental strand, 4784274 - 4784136
Alignment:
Q  645 agttccattgaaatggtgatggtttcaaataagta---gtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 741  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784274 agttccattgaaatggtgatggtttcaaacaagtactagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaa 4784175  T
Q  742 gcacatacataagaacttttttatagattattcatctca 780  Q
    |||||||||  ||||||||||||| |||||||| |||||    
T  4784174 gcacatacacgagaacttttttatggattattcctctca 4784136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 438 - 599
Target Start/End: Original strand, 22917026 - 22917186
Alignment:
Q  438 gggtggcatttagcttggacgagttgaagaattggccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttat-------cata 530  Q
    |||||||||||||||||||| ||||||||||||||        ||||||       |||||||||||||||||||||||||||||||||       ||||    
T  22917026 gggtggcatttagcttggaccagttgaagaattgg--------gaccaatttttttaatgtttagattagacaatccaccaaatcttatcagttatcata 22917117  T
Q  531 ctctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 599  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22917118 ctctacccacaccctatctaagccatcaccaactctatctccttccttgctctttctctctcttggtac 22917186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 748
Target Start/End: Complemental strand, 5320185 - 5320150
Alignment:
Q  713 ttatggtcattgattgaaactgatcttaagcacata 748  Q
    |||||||||||||||||||||||||| |||||||||    
T  5320185 ttatggtcattgattgaaactgatctcaagcacata 5320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 442 - 599
Target Start/End: Complemental strand, 39773853 - 39773695
Alignment:
Q  442 ggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccac 540  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||||       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39773853 ggcatttagcttggaccagttgaagaattggtccatgatgggccaatttttttaatgtttagattagacaatccaccaaatcatatcatactctacccac 39773754  T
Q  541 accttatctaagccatcaccaactctatctccttcattgctctttctctctcttggtac 599  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39773753 accctatctaagccatcaccaactctatctccttcattgctctttttctctcttggtac 39773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 668 - 762
Target Start/End: Complemental strand, 39773650 - 39773556
Alignment:
Q  668 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacataagaacttttt 762  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39773650 ttcaaataagtagtcataccaatatatagctaaatcacataattattatggtcattgattgaaactgatcttaagcacatacacaagaacttttt 39773556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 193 - 364
Target Start/End: Complemental strand, 26353504 - 26353346
Alignment:
Q  193 aagcatgtttttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagctt 292  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||                 
T  26353504 aagcatgtgtttggcatagagtttagaataccaaaagcacggctggcgtggttaccaaagcaaatctgtcgtgactttattaagcta------------- 26353418  T
Q  293 ttgtgtaaacgtgatacattaccgtagttttctatagaacgtggtttgtcaaaggcaatgacaaacatgcta 364  Q
     ||| ||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26353417 atgtctaaacctgatatattaccgtggttttctatagaacgtggtttgtcaaacgcaatgacaaacatgcta 26353346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 19138395 - 19138444
Alignment:
Q  248 caaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 297  Q
    ||||||||| ||||||||| |||||||||||| |||||| ||||||||||    
T  19138395 caaagcaaaactgccgtgattttattaagctagcatttgaagcttttgtg 19138444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 439 - 590
Target Start/End: Original strand, 6127068 - 6127220
Alignment:
Q  439 ggtggcatttagcttggacgagttgaagaattgg-ccatgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacc 537  Q
    |||| |||||||||| ||  | |||||||||||| ||||||||||||||       |||||||||||||||| ||||| |||||||||||||| |||| |    
T  6127068 ggtgtcatttagcttagatcaattgaagaattggtccatgatggaccaatttttttaatgtttagattagactatccatcaaatcttatcatattctatc 6127167  T
Q  538 cacaccttatctaagccatcaccaactctatctccttcattgctctttctctc 590  Q
    |||||   |||| |||||||| |||||||||||| ||||||| ||| ||||||    
T  6127168 cacactaaatcttagccatcatcaactctatctctttcattgttctctctctc 6127220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 44398274 - 44398368
Alignment:
Q  494 aatgtttagattagacaatccaccaaatcttatcatactctacccacaccttatctaagccatcaccaactctatctccttcattgctctttctc 588  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||||   |||| |||||| |||||||||||||| ||||||| ||| ||||    
T  44398274 aatgtttagattagactatccatcaaatcttatcatactctatccacactaaatcttagccattaccaactctatctctttcattgttctctctc 44398368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 444 - 579
Target Start/End: Original strand, 43810833 - 43810969
Alignment:
Q  444 catttagcttggacgagttgaagaattggcc-atgatggaccaannnnnnnaatgtttagattagacaatccaccaaatcttatcatactctacccacac 542  Q
    |||||||||||||| | ||||| ||||||   ||||||||||||       ||| |||||||||||| ||||| |||||||||||  |||||| ||||||    
T  43810833 catttagcttggaccaattgaataattggtttatgatggaccaatttttttaatatttagattagactatccatcaaatcttatcgaactctatccacac 43810932  T
Q  543 cttatctaagccatcaccaactctatctccttcattg 579  Q
       |||| ||||||||||||||||||||| |||||||    
T  43810933 taaatcttagccatcaccaactctatctctttcattg 43810969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 36686712 - 36686618
Alignment:
Q  202 tttgggatagagtttagaataccaaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgt 296  Q
    ||||| |||||||||| ||| |||||||||||| ||||||| ||| ||||||||| || |  ||||||||| |||||| | ||| ||||||||||    
T  36686712 tttggtatagagtttacaatcccaaaagcatggttggcgtgattatcaaagcaaaactacaatgactttatgaagctaacctttagagcttttgt 36686618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 23015165 - 23015238
Alignment:
Q  224 caaaagcatggctggcgtggttaccaaagcaaatctgccgtgactttattaagctaccatttggagcttttgtg 297  Q
    |||||| | |||||||||| ||| ||||||||| || |  ||||||||| |||||| | |||||||||||||||    
T  23015165 caaaagtacggctggcgtgattatcaaagcaaaactacaatgactttatgaagctagcctttggagcttttgtg 23015238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University