View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_40 (Length: 404)
Name: NF19757_high_40
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 81 - 372
Target Start/End: Complemental strand, 22815626 - 22815329
Alignment:
| Q |
81 |
tattactataagttttcttaattcttctaatttaatcaacatagtctaatatttaggaaacaagtactcaataagtaccctgcacaatgtcatgcatact |
180 |
Q |
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| T |
22815626 |
tattactatcagttttcttaattcttctaagttaatcaacatagtctaatatttaggaaacaagtactcaataagtaccctgcacaatgtcatgcttact |
22815527 |
T |
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| Q |
181 |
atgcgttaacatcatcttcatattaccaaaactatgggtaatgaaggaaatggagaggaacctaactcccctaggttatggtat-ataaca-attatgga |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||| ||| |
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| T |
22815526 |
atgcgttaacatcatcttcatattaccaaaactatgggtaatgaaggaaatggagaggaacctaactcccctaggttatggaatgaggacatatta-gga |
22815428 |
T |
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| Q |
279 |
agaaattcaccacaaggccaactaagcacat---agctta-attaa-taatatttagaatgtggaaaacattaatcatcaatcactcactatagattat |
372 |
Q |
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||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22815427 |
agaaattcaccacaaggccaactaagcacatatgaggttagcttaattaatatttagaatgtggaaaacattaatcatcaatcactcactatagattat |
22815329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22815742 - 22815691
Alignment:
| Q |
1 |
actgattattctacctcattttaatgctataaattaaagtttttcatccttc |
52 |
Q |
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| T |
22815742 |
actgattattctacctcattttaatgctataaattaaagtttttcatccttc |
22815691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 22814851 - 22814817
Alignment:
| Q |
370 |
tatgagtatcacaggtgaatatagaaaatcaattc |
404 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
22814851 |
tatgagtatcacaggtgaatatagaaaatcaattc |
22814817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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