View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_41 (Length: 403)
Name: NF19757_high_41
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 10990536 - 10990164
Alignment:
| Q |
16 |
catcaaacgaagaaacttttggtttggaacagaacgagaaatgctgattaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgatt |
115 |
Q |
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| T |
10990536 |
catcaaacgaagaaacttttggtttggaacagaacgagaaatgctgattaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgatt |
10990437 |
T |
|
| Q |
116 |
gattcagaagagaggataacgtatatttgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990436 |
gattcagaagagaggataacgtatatttgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattga |
10990337 |
T |
|
| Q |
216 |
aaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990336 |
aaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttg |
10990237 |
T |
|
| Q |
316 |
tgggtcaaatagttcaatggtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagt |
388 |
Q |
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| T |
10990236 |
tgggtcaaatagttcaatggtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagt |
10990164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 65 - 388
Target Start/End: Complemental strand, 11040002 - 11039679
Alignment:
| Q |
65 |
aatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtacttaaac |
164 |
Q |
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| T |
11040002 |
aatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttgtactagaagggatagcatatatttgagaggtggaagttcttagac |
11039903 |
T |
|
| Q |
165 |
acggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaa |
264 |
Q |
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||| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||| |
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| T |
11039902 |
acgaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcatcgtagtcatgtttcaagtagttgaa |
11039803 |
T |
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| Q |
265 |
atgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttcttaaca |
364 |
Q |
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| T |
11039802 |
atgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttcttaaca |
11039703 |
T |
|
| Q |
365 |
ttgagtttcactttgtaaggaagt |
388 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11039702 |
ttgagtttcactttgtaaggaagt |
11039679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 143 - 380
Target Start/End: Complemental strand, 11024859 - 11024622
Alignment:
| Q |
143 |
tgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcttcat |
242 |
Q |
| |
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||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| ||||||| |||||||||| |||||||| |||||||||||| |||| |
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| T |
11024859 |
tgagaggttgaggtacttagacatggaaccaaataagaatctatgtcgtctctaatcaaaagtgaacaattgataaagtgatagtcgacaaaatcatcat |
11024760 |
T |
|
| Q |
243 |
agtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtg |
342 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||| |
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| T |
11024759 |
agtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaatagtttggtg |
11024660 |
T |
|
| Q |
343 |
tttgtagtcaatgttcttaacattgagtttcactttgt |
380 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
11024659 |
tttgtagtcaatgttcttgacattgagtttcactttgt |
11024622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 230 - 388
Target Start/End: Original strand, 11000868 - 11001026
Alignment:
| Q |
230 |
acaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagtt |
329 |
Q |
| |
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||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||| |
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| T |
11000868 |
acaaattcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgttgatatgtttgcaaagacaactttgtggatcggatagtt |
11000967 |
T |
|
| Q |
330 |
caatggtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagt |
388 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000968 |
gaatagtttggtgtttgtagtcaatgttcttaacattgagtttcactttgtaaggaagt |
11001026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 378
Target Start/End: Complemental strand, 10929183 - 10929065
Alignment:
| Q |
260 |
ttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttct |
359 |
Q |
| |
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||||||||||| ||||||||| |||||||||| ||| |||| || |||| |||||| || |||||||||| ||||||| | ||||||| ||||||| |
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| T |
10929183 |
ttgaaatgagaagatgaaagattaaggttgtggaactgtatgtataggcaaccttgtggatcggatagttcaatagtttggtttgtgtagtcgatgttct |
10929084 |
T |
|
| Q |
360 |
taacattgagtttcacttt |
378 |
Q |
| |
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| || |||||||||||||| |
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| T |
10929083 |
tgaccttgagtttcacttt |
10929065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 10929393 - 10929228
Alignment:
| Q |
62 |
attaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtactta |
161 |
Q |
| |
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|||| |||||||||| |||||||||||||||| | ||||| | | | | ||| | |||| ||| ||||| ||||| ||||||||||||| || |||| |
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| T |
10929393 |
attactgaaacattatacattttggtgcaaaacgtgagaggaaagaatttgataggttcataagcagggatagcgtatgtttgagaggttgaagtgctta |
10929294 |
T |
|
| Q |
162 |
aacacggaaccaaataagaatttat---gtcatctctattcaaaagcgaacaattgaaaaagtgat |
224 |
Q |
| |
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||||||||||||||| |||| || ||||||||| ||||||| |||||||| |||||||||| |
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| T |
10929293 |
gacacggaaccaaataggaatccatatcatcatctctaatcaaaagtgaacaattaaaaaagtgat |
10929228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 10906602 - 10906563
Alignment:
| Q |
335 |
gtttggtgtttgtagtcaatgttcttaacattgagtttca |
374 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
10906602 |
gtttggtgtctgtagtcaatgttcttaacattgagtttca |
10906563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 10976994 - 10976956
Alignment:
| Q |
337 |
ttggtgtttgtagtcaatgttcttaacattgagtttcac |
375 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||| |
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| T |
10976994 |
ttggtgtctatagtcaatgttcttaacattgagtttcac |
10976956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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