View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_44 (Length: 397)
Name: NF19757_high_44
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 29038857 - 29039226
Alignment:
| Q |
17 |
agttactgatttaacacttttatactcagataccgtcccattagaaaagtttgttgaggacgtaacttcaacagtatctgcatcagagtgatatagtgaa |
116 |
Q |
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| T |
29038857 |
agttactgatttaacacttttatactcagataccgtcccattagaaaagttcgttgaggacgtaacttcaacagtatctgcatcagagtgatatagtgaa |
29038956 |
T |
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| Q |
117 |
gtgagcaacgtcacatagaacaaaatgaatcaatggaatgaacaataaagttatatgaaagaattaattcatatacattgtcagtgtaaa-nnnnnnnac |
215 |
Q |
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| T |
29038957 |
gtgagcaacgtcacatagaacaaaatgaatcaatggaatgaacaataaagtaatatgaaagaattaattcatatacattgtcagtgtaaatgttttttac |
29039056 |
T |
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| Q |
216 |
acatcaatcgattataaccattagttcatttaaaaacatttgacttcaatcacaactattgtcaatgatttgtcgacacctttttacaccgacagtgtat |
315 |
Q |
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| T |
29039057 |
acgtcaatcaattataatcattagttcatttaaaaacatttgacttcaatcacaactattatcaatgatttgtcgacacctttttacaccgacagtgtat |
29039156 |
T |
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| Q |
316 |
caaagttaaagtctacaatgaaaatgcacattatgcataagtgcacaaaagtttcatattttcttatatt |
385 |
Q |
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| T |
29039157 |
caaagttaaagtctaaaatgaaaatgcacattatgcataagtgcacaaaagtttcatattttcttatatt |
29039226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 1194247 - 1194293
Alignment:
| Q |
220 |
caatcgattataaccattagttcatttaaaaacatttgacttcaatc |
266 |
Q |
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| T |
1194247 |
caatcaattataactattggttcctttaaaaacatttgacttcaatc |
1194293 |
T |
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