View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_45 (Length: 395)

Name: NF19757_high_45
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_45
NF19757_high_45
[»] chr4 (32 HSPs)
chr4 (191-378)||(51786781-51786968)
chr4 (93-170)||(51786717-51786794)
chr4 (1-90)||(32728359-32728448)
chr4 (1-90)||(55272385-55272474)
chr4 (1-92)||(38851513-38851604)
chr4 (1-90)||(17619161-17619250)
chr4 (1-95)||(711957-712051)
chr4 (1-93)||(3756255-3756347)
chr4 (2-94)||(35037003-35037095)
chr4 (4-95)||(33703138-33703229)
chr4 (4-90)||(28988475-28988561)
chr4 (4-90)||(55966358-55966444)
chr4 (1-86)||(48435588-48435673)
chr4 (1-90)||(48463459-48463548)
chr4 (12-90)||(960890-960968)
chr4 (4-90)||(35017735-35017820)
chr4 (4-90)||(41878408-41878494)
chr4 (4-93)||(27893854-27893943)
chr4 (4-90)||(27864566-27864652)
chr4 (4-90)||(41847973-41848059)
chr4 (4-89)||(23204790-23204875)
chr4 (5-90)||(28982835-28982920)
chr4 (2-90)||(46827716-46827804)
chr4 (1-55)||(19879991-19880045)
chr4 (4-54)||(43949813-43949863)
chr4 (12-90)||(49229684-49229762)
chr4 (7-92)||(43735742-43735827)
chr4 (4-90)||(1771278-1771364)
chr4 (4-90)||(23035982-23036068)
chr4 (4-54)||(39631139-39631189)
chr4 (4-90)||(45490325-45490411)
chr4 (1-38)||(36004125-36004162)
[»] chr8 (19 HSPs)
chr8 (1-90)||(34304790-34304879)
chr8 (1-90)||(35181518-35181607)
chr8 (1-90)||(16603635-16603724)
chr8 (1-90)||(18066727-18066816)
chr8 (1-94)||(33630002-33630095)
chr8 (1-71)||(16358842-16358912)
chr8 (4-94)||(42295193-42295283)
chr8 (4-93)||(29800962-29801051)
chr8 (4-90)||(5754905-5754991)
chr8 (4-90)||(11582768-11582854)
chr8 (4-90)||(36743495-36743581)
chr8 (4-93)||(20148759-20148848)
chr8 (4-92)||(26125635-26125723)
chr8 (1-38)||(10678161-10678198)
chr8 (4-84)||(31384672-31384752)
chr8 (4-54)||(29705400-29705450)
chr8 (4-90)||(30660754-30660840)
chr8 (4-54)||(40528646-40528696)
chr8 (6-54)||(1375580-1375628)
[»] chr1 (20 HSPs)
chr1 (1-90)||(38335920-38336009)
chr1 (1-90)||(44112679-44112768)
chr1 (1-90)||(46168385-46168474)
chr1 (1-90)||(45639741-45639830)
chr1 (1-90)||(48119630-48119719)
chr1 (1-90)||(35003296-35003385)
chr1 (1-90)||(38113204-38113293)
chr1 (1-90)||(41065155-41065244)
chr1 (1-90)||(45427754-45427843)
chr1 (1-90)||(45705827-45705916)
chr1 (1-90)||(26585464-26585553)
chr1 (4-90)||(37814780-37814866)
chr1 (4-90)||(43571098-43571184)
chr1 (4-90)||(5489778-5489864)
chr1 (1-90)||(35000122-35000211)
chr1 (4-92)||(7447826-7447913)
chr1 (4-95)||(48498974-48499065)
chr1 (4-54)||(4401366-4401416)
chr1 (4-50)||(4888085-4888131)
chr1 (4-93)||(2497574-2497663)
[»] chr7 (22 HSPs)
chr7 (2-90)||(40236921-40237009)
chr7 (1-90)||(31513289-31513378)
chr7 (1-90)||(31408642-31408731)
chr7 (4-92)||(10573749-10573837)
chr7 (4-90)||(9216304-9216389)
chr7 (1-90)||(33384872-33384962)
chr7 (4-90)||(35069723-35069809)
chr7 (7-90)||(43317445-43317528)
chr7 (4-90)||(24001024-24001110)
chr7 (4-90)||(42538443-42538529)
chr7 (4-94)||(43343636-43343726)
chr7 (4-93)||(44326177-44326266)
chr7 (4-92)||(44416946-44417034)
chr7 (7-90)||(24280611-24280694)
chr7 (4-54)||(32029829-32029879)
chr7 (4-89)||(26898414-26898499)
chr7 (1-90)||(27535240-27535329)
chr7 (25-90)||(39998410-39998475)
chr7 (1-93)||(4638208-4638300)
chr7 (4-54)||(5015433-5015483)
chr7 (4-54)||(42972890-42972940)
chr7 (6-54)||(38160593-38160641)
[»] chr2 (23 HSPs)
chr2 (1-90)||(12415469-12415558)
chr2 (1-90)||(12427529-12427618)
chr2 (1-90)||(16803970-16804059)
chr2 (1-90)||(16843252-16843341)
chr2 (1-90)||(43114559-43114648)
chr2 (1-92)||(11825663-11825754)
chr2 (1-92)||(41281983-41282074)
chr2 (1-90)||(18491707-18491796)
chr2 (7-93)||(6518484-6518569)
chr2 (1-90)||(966843-966932)
chr2 (1-92)||(4299429-4299520)
chr2 (1-68)||(4451959-4452026)
chr2 (4-90)||(30838634-30838720)
chr2 (1-86)||(34895750-34895835)
chr2 (4-90)||(34817788-34817874)
chr2 (6-90)||(43335777-43335861)
chr2 (4-54)||(13780747-13780797)
chr2 (4-90)||(19047159-19047245)
chr2 (4-93)||(43490413-43490502)
chr2 (6-54)||(42026807-42026855)
chr2 (4-90)||(1750416-1750502)
chr2 (7-93)||(8896598-8896684)
chr2 (4-92)||(7070416-7070504)
[»] chr3 (21 HSPs)
chr3 (2-90)||(25996270-25996358)
chr3 (1-90)||(9434126-9434215)
chr3 (1-95)||(10457901-10457995)
chr3 (1-90)||(53273693-53273782)
chr3 (4-90)||(46941055-46941141)
chr3 (1-95)||(52627986-52628080)
chr3 (1-90)||(4190274-4190363)
chr3 (1-90)||(34791831-34791920)
chr3 (4-90)||(40480751-40480837)
chr3 (4-90)||(42100690-42100776)
chr3 (4-90)||(45126940-45127026)
chr3 (1-90)||(51757595-51757684)
chr3 (4-93)||(53581870-53581959)
chr3 (4-90)||(54237098-54237184)
chr3 (4-54)||(40808903-40808953)
chr3 (4-90)||(42394431-42394517)
chr3 (1-92)||(27748563-27748654)
chr3 (4-43)||(51249357-51249396)
chr3 (4-54)||(24688414-24688464)
chr3 (4-90)||(47191038-47191123)
chr3 (7-88)||(29558249-29558330)
[»] chr5 (9 HSPs)
chr5 (1-90)||(17208076-17208165)
chr5 (1-90)||(32473403-32473492)
chr5 (1-90)||(30622728-30622816)
chr5 (4-94)||(5256993-5257083)
chr5 (4-90)||(2614661-2614747)
chr5 (4-90)||(41334675-41334761)
chr5 (4-90)||(7617135-7617221)
chr5 (7-90)||(38470581-38470664)
chr5 (4-54)||(22512343-22512393)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-92)||(45728-45819)
[»] chr6 (17 HSPs)
chr6 (1-92)||(27441542-27441633)
chr6 (1-90)||(33242405-33242494)
chr6 (1-90)||(33253915-33254004)
chr6 (4-90)||(7367551-7367637)
chr6 (1-90)||(3213402-3213491)
chr6 (4-90)||(13743233-13743319)
chr6 (4-90)||(13748733-13748819)
chr6 (1-90)||(30014345-30014434)
chr6 (7-90)||(7273350-7273433)
chr6 (4-90)||(9698345-9698431)
chr6 (4-54)||(21279967-21280017)
chr6 (4-90)||(26670021-26670107)
chr6 (4-92)||(24203999-24204087)
chr6 (15-90)||(31109245-31109320)
chr6 (4-90)||(21293689-21293775)
chr6 (7-94)||(30735980-30736067)
chr6 (4-90)||(7292749-7292835)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-90)||(35465-35554)
[»] scaffold0119 (1 HSPs)
scaffold0119 (4-90)||(687-773)
[»] scaffold0385 (1 HSPs)
scaffold0385 (4-90)||(11253-11339)
[»] scaffold0038 (1 HSPs)
scaffold0038 (4-90)||(112657-112743)
[»] scaffold0187 (2 HSPs)
scaffold0187 (4-54)||(14200-14250)
scaffold0187 (4-54)||(24528-24578)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 191 - 378
Target Start/End: Original strand, 51786781 - 51786968
Alignment:
Q  191 tagtttaaaggctaaattgttaagtgtaaacagaaataaattatcagtttctcttgtattggatgctacaaatttactttttagtaatatatattatata 290  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51786781 tagtttaaaggctaaattgttaagtgtaaacagaaataaatgatcagtttctcttgtattggatgctacaaatttactttttagtaatatatattataca 51786880  T
Q  291 ctgtaatttagaacaaagactatgatgaaataatcccccatacttggggtatgccttcaacaaaattggatgattttgttgatgttgt 378  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51786881 ctgtaatttagaacaaagactatgatgaaataatcgcccatacttggggtatgccttcaacaaaattggatgattttgttgatgttgt 51786968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 51786717 - 51786794
Alignment:
Q  93 ttcctttgatcatactccctgattaatagatatttctgttcgaggagctaaaaacatggaacactagtttaaaggcta 170  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51786717 ttcctttgatcatactccctgattaatagatgtttctgttcgaggagctaaaaacatggaacactagtttaaaggcta 51786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32728448 - 32728359
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | | ||||||||||| ||||||||||||||||||    
T  32728448 gtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatttt 32728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 55272385 - 55272474
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||   | ||||||||||| ||||||||||||||||||    
T  55272385 gtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacatttt 55272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 38851604 - 38851513
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||||| || ||| ||||||||||| || |||||||||||||||||    
T  38851604 gtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacatttttc 38851513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17619161 - 17619250
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | | ||||||||||   |||||||||||||||||    
T  17619161 gtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacatttt 17619250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 712051 - 711957
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttcttc 95  Q
    ||||| ||||||||||||||||||||||| ||| |||||||| || ||||||||| | | |||||||||||  ||||||||||||||||| ||||    
T  712051 gtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccttc 711957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3756255 - 3756347
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||| ||||||||| ||||||| ||||| ||| ||||||||||| ||||||||| | | |||||||||||  ||||||||||||||||||||    
T  3756255 gtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttct 3756347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 35037095 - 35037003
Alignment:
Q  2 tatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||   | |||| ||||||  || ||||||||||||||||||    
T  35037095 tatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttttctt 35037003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 33703229 - 33703138
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttcttc 95  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||| ||  | |||||  ||||||||||||||||| ||||    
T  33703229 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttccttc 33703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 28988561 - 28988475
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||||||||||||| ||||||||||||| |||||||| |||||||| || | ||||| |||||  |||||||||||||||||    
T  28988561 tggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 55966358 - 55966444
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||  ||| ||||| |||||  |||| ||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48435588 - 48435673
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaaca 86  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||   |||||||||||||    
T  48435588 gtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaaca 48435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 48463459 - 48463548
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| | || ||||| ||||   |||| ||||||||||||    
T  48463459 gtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacatttt 48463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 960890 - 960968
Alignment:
Q  12 agatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||||||||||| || || |||||||||   | |||||||||||  |||||||||||||||||    
T  960890 agatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 960968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 35017820 - 35017735
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||| | |||||| |||||||| ||||||| || |||||  |||||||||||||||||    
T  35017820 tggttgtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacatttt 35017735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 41878494 - 41878408
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| ||| |||||| ||||||||| || || |||||||| || | ||||| |||||| |||||||||||||||||    
T  41878494 tggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 27893854 - 27893943
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||| |||||||||||||||    
T  27893854 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 27893943  T

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Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 27864652 - 27864566
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||| ||||||||||||    
T  27864652 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 41848059 - 41847973
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||| ||||||||| |||||||||| |||||||||||| |||||||| || | | |||  |||| |||||| |||||||||||    
T  41848059 tggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacatttt 41847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 23204790 - 23204875
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacattt 89  Q
    ||||||||| ||||| |||| ||||| |||||||| ||| |||||||||||  ||| || || |||||| ||||||||||||||||    
T  23204790 tggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 28982835 - 28982920
Alignment:
Q  5 ggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||| |||||||||| ||||||||  ||||||||||||||| | | ||  | |||||  |||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacatttt 28982920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 46827716 - 46827804
Alignment:
Q  2 tatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||| ||||||||| |||||||||||| || | |||||||| || |||||||||   | |||||||||||  |||||||||||||||||    
T  46827716 tatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 46827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19880045 - 19879991
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaata 55  Q
    ||||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||    
T  19880045 gtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaata 19879991  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 43949813 - 43949863
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||    
T  43949813 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaat 43949863  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 49229684 - 49229762
Alignment:
Q  12 agatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||| ||| ||| |||||||||   ||||||||| | | ||||||||||| |||||||| |||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacatttt 49229762  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 43735827 - 43735742
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    |||||||||||| ||| |||||| || ||||| ||||| ||||| ||| |||| || || ||||| |||||||||||| |||||||    
T  43735827 ttgtgagatgaacttatcaaaatatctctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgtaatatttttc 43735742  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 1771278 - 1771364
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| ||| |||||| || ||||| |||||| ||||||||  | | || || |||||  |||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 23036068 - 23035982
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||| ||||| ||||||||  || || ||||||||| | | || || ||||| | ||||||||||||||||    
T  23036068 tggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 39631189 - 39631139
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||| | ||||||||    
T  39631189 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaat 39631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 45490325 - 45490411
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||| ||| | |||||||| |||| | ||||||||  ||| ||| | ||||   |||||||||||||||||    
T  45490325 tggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacatttt 45490411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36004125 - 36004162
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaat 38  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  36004125 gtatggttgtgagataaatttatcaaaatgtccctaat 36004162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34304879 - 34304790
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | | ||||||||||| ||||||||||||||||||    
T  34304879 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacatttt 34304790  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35181607 - 35181518
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  35181607 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35181518  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 16603635 - 16603724
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||| |||||| | |||||||||||  ||| |||||||||||||    
T  16603635 gtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacatttt 16603724  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18066727 - 18066816
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||  || |||||||||||  |||||||||||||||||    
T  18066727 gtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacatttt 18066816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33630002 - 33630095
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    |||| ||||||||||||| |||| |||||||||||||||||| || |||||||| || | |||||||||||  ||||| |||||||||||||||    
T  33630002 gtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttctt 33630095  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16358842 - 16358912
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaag 71  Q
    |||||||||||||||||||||| |||||| | | ||||||||||||||||||||| | | |||||||||||    
T  16358842 gtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaag 16358912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 42295283 - 42295193
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||||| || | || || |||||  |||||||||||||||||||||    
T  42295283 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttctt 42295193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 29800962 - 29801051
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||| |||||||||||||||    
T  29800962 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 29801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 5754991 - 5754905
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| ||||||||  ||||||||||||||  ||| || || ||||   |||||||||||||||||    
T  5754991 tggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 11582854 - 11582768
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  11582854 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 36743495 - 36743581
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  36743495 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 20148848 - 20148759
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| |||||||||| ||||||||  ||| | ||||||||  ||| ||||| |||||  |||| |||||||||||||||    
T  20148848 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttct 20148759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 26125723 - 26125635
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||   || ||||| |||||  |||| ||||||||||||||    
T  26125723 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttc 26125635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10678161 - 10678198
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaat 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10678161 gtatggttgtgagatgaatttaccaaaatgtccttaat 10678198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 31384752 - 31384672
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaa 84  Q
    ||||||||||||||| |||||||||| | |||||| |||||| |||||||||  || || || |||||  |||||||||||    
T  31384752 tggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 29705450 - 29705400
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| ||| |||||| |||||||| |||||| ||||||||    
T  29705450 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaat 29705400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 30660754 - 30660840
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||| ||||||| |||||||||| |||||||| ||| || ||||||||  ||| ||  | |||||  |||||||||||||||||    
T  30660754 tggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacatttt 30660840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 40528646 - 40528696
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    |||||||||||| |||||| |||||||||||||||  ||||| ||||||||    
T  40528646 tggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaat 40528696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 1375628 - 1375580
Alignment:
Q  6 gttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    |||||||||| ||||||||||||| ||||||||  ||||| ||||||||    
T  1375628 gttgtgagataaatttaccaaaatatccctaatatatggggtgtacaat 1375580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38336009 - 38335920
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||  |||||||||||||||||    
T  38336009 gtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44112768 - 44112679
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  44112768 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 44112679  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46168474 - 46168385
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| |||||||||||||||  |||||||||||||||||    
T  46168474 gtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacatttt 46168385  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 45639741 - 45639830
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||||||||||||||||||||||| ||| ||||| ||||| ||||||||| ||| |||||||||||| |||||||||||||||||    
T  45639741 gtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacatttt 45639830  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 48119719 - 48119630
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  48119719 gtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 48119630  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35003385 - 35003296
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  35003385 gtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35003296  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38113204 - 38113293
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| | | |||||||||||  ||||||| |||||||||    
T  38113204 gtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacatttt 38113293  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41065244 - 41065155
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||| | | | |||||||||||  |||||||||||||||||    
T  41065244 gtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 45427754 - 45427843
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||||||| | | ||||||||||   | |||||||||||||||    
T  45427754 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacatttt 45427843  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 45705916 - 45705827
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||||| |||||||||| ||||||||||  |||||||||  || |||||||||||  ||||||| |||||||||    
T  45705916 gtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacatttt 45705827  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26585553 - 26585464
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||| ||||||||||||| ||||| ||| ||||||||||| |||||||||   | |||||||||||||||||||| |||||||||    
T  26585553 gtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacatttt 26585464  T

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Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 37814866 - 37814780
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||| |||||||||||||||| ||| |||| |||||| |||||||| |||| ||||| |||||  |||| ||||||||||||    
T  37814866 tggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 37814780  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43571098 - 43571184
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| |||||||| || | || || |||||  |||||||||||||||||    
T  43571098 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 5489864 - 5489778
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  5489864 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35000122 - 35000211
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||   | |||||||   | ||||||||||   |||||||||||||||||    
T  35000122 gtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacatttt 35000211  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7447913 - 7447826
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||| ||| |||||| ||  |||| |||||| ||||||||  ||| || || ||||| ||||||||||||||||||||    
T  7447913 tggttgtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttttc 7447826  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 48498974 - 48499065
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttcttc 95  Q
    ||||||||||||||| |||||||||| |||||||| |||| | ||||||||    | ||  | |||||| ||||||||||||||||| ||||    
T  48498974 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttccttc 48499065  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 4401416 - 4401366
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| || ||||| |||||| ||||||||    
T  4401416 tggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaat 4401366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 4888131 - 4888085
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgta 50  Q
    |||||||||||| || |||||||||| |||||||| |||||||||||    
T  4888131 tggttgtgagataaacttaccaaaatatccctaatacatgggatgta 4888085  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 2497574 - 2497663
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| |||||||||| ||| ||||  ||||| ||||||||   || ||||| ||||   |||| |||||||||||||||    
T  2497574 tggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttct 2497663  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 40237009 - 40236921
Alignment:
Q  2 tatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||  |||||||||||||||||    
T  40237009 tatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacatttt 40236921  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31513378 - 31513289
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||| | | |||||||||||| |||||||||||||||||    
T  31513378 gtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacatttt 31513289  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31408642 - 31408731
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||||||||   | |||||||||||  |||||||||||||||||    
T  31408642 gtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 31408731  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 10573837 - 10573749
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    |||||||||||||||||||||||||| | |||||| |||||| ||||||||| ||| ||||| |||||  |||| ||||||||||||||    
T  10573837 tggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 9216389 - 9216304
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| || |||||||||||| ||||||||| |||||| || |||||  |||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacatttt 9216304  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33384962 - 33384872
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaata-agatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | |||||||  | | ||||||||||  ||||||||||||||||||    
T  33384962 gtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacatttt 33384872  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 35069809 - 35069723
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||| | |||||||| || | || || |||||| |||||||||||||||||    
T  35069809 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 43317528 - 43317445
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||||| || | ||||| ||||   |||||||||||||||||    
T  43317528 ttgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 24001024 - 24001110
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  24001024 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 42538443 - 42538529
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  42538443 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 43343636 - 43343726
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    ||||||||||||||| ||| |||||| |||||||| |||||| ||||||||| | | ||  | ||||  ||||||||||||||||||||||    
T  43343636 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttctt 43343726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 44326266 - 44326177
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| |||||||||| ||||||||  ||| | ||||||||  ||| ||||| |||||  |||| |||||||||||||||    
T  44326266 tggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttct 44326177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 44416946 - 44417034
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||| ||| |||||| |||||||| |||||| ||||||||| | | ||  | ||||  ||||||||||||||||||||    
T  44416946 tggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 24280611 - 24280694
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||| |  ||| ||||||||||||| |||| | | ||||| |||||  |||||| ||||||||||    
T  24280611 ttgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacatttt 24280694  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 32029829 - 32029879
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||| |||||||||||||||||| |||||||| |||||| ||||||||    
T  32029829 tggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaat 32029879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 26898414 - 26898499
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacattt 89  Q
    ||||||| ||||||| |||||||||| |||||||| ||||| |||||||||  | | ||||| ||||   ||||||||||||||||    
T  26898414 tggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27535240 - 27535329
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||| ||||||||||||| |||||||||||||  |||  |||||  |||||||||   | |||||||||||  |||||||||||||||||    
T  27535240 gtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 27535329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 39998475 - 39998410
Alignment:
Q  25 aaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| |||||||| |||||| ||||||||| ||| ||||||||||   |||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacatttt 39998410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4638208 - 4638300
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    |||||||||||||||||| |||||||||| ||| ||||  ||||| ||||||||    | ||||| ||||   ||||||||||||||||||||    
T  4638208 gtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttct 4638300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 5015483 - 5015433
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||| | ||||||||    
T  5015483 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaat 5015433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 42972940 - 42972890
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||| | ||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaat 42972890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 38160593 - 38160641
Alignment:
Q  6 gttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||| |||| ||||| |||||||| |||||| ||||||||    
T  38160593 gttgtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12415469 - 12415558
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| | |||||||||||  |||||||||||||||||    
T  12415469 gtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12415558  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12427529 - 12427618
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| | |||||||||||  |||||||||||||||||    
T  12427529 gtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12427618  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16804059 - 16803970
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||||||||||  |||||||||||||||||    
T  16804059 gtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16803970  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16843341 - 16843252
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||||||||||  |||||||||||||||||    
T  16843341 gtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 16843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43114648 - 43114559
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  43114648 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 43114559  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 11825663 - 11825754
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||||    
T  11825663 gtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 11825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 41281983 - 41282074
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||||    
T  41281983 gtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 41282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18491796 - 18491707
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| | | |||||||||||  |||||||||||||||||    
T  18491796 gtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 6518484 - 6518569
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||   | |||||||||||  ||||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaag-gtgttcatgtaacatttttct 6518569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 966843 - 966932
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| |||||||||||||||||||||| || | ||||||||||| ||||||||| | | |||||||||||  |||||||||||||||||    
T  966843 gtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4299429 - 4299520
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||  ||||||||| | | |||||||||||  ||||||| |||||||||||    
T  4299429 gtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttttc 4299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4451959 - 4452026
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgatta 68  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||| ||||||||    
T  4451959 gtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 30838720 - 30838634
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||| ||  | |||||  |||||||||||||||||    
T  30838720 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34895750 - 34895835
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaaca 86  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||   |||||||||||||    
T  34895750 gtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaaca 34895835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 34817788 - 34817874
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||||||||||| | || |||||||| |||||||| || | | ||| |||||  |||||||||||||||||    
T  34817788 tggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 43335777 - 43335861
Alignment:
Q  6 gttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||||| || | || || ||||  |||||||| |||||||||    
T  43335777 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacatttt 43335861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 13780747 - 13780797
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||||||| |||||| ||||||||| ||||| ||||||||    
T  13780747 tggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaat 13780797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 19047245 - 19047159
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||   || || || |||||  |||||||||||||||||    
T  19047245 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 43490413 - 43490502
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||| ||||||||| |||||||||| |||||||| ||| |  ||||||||  ||| || || |||||  ||||||||||||||||||||    
T  43490413 tggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttct 43490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 42026855 - 42026807
Alignment:
Q  6 gttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    |||||||||||||||| ||||||| ||||||||||  ||||||||||||    
T  42026855 gttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaat 42026807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 1750502 - 1750416
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||| ||||| |||||||| ||| || ||||||||  | | || || |||||  |||||||||||||||||    
T  1750502 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 8896598 - 8896684
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||||||||||| | |||| || || || ||||||||   || | ||| |||||  ||||||||||||||||||||    
T  8896598 ttgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttttct 8896684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 7070504 - 7070416
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||| ||||||||||| ||||||||||| |||  ||||    ||||||  ||| ||||| |||||  |||||||||||||||||||    
T  7070504 tggttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttttc 7070416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 25996358 - 25996270
Alignment:
Q  2 tatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||| |||||||||||  |||||||||||||||||    
T  25996358 tatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacatttt 25996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9434215 - 9434126
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||   | |||||||||||  |||||||||||||||||    
T  9434215 gtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 9434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10457901 - 10457995
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttcttc 95  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||| | | ||||||||||   ||||||||||||||||| ||||    
T  10457901 gtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattttccttc 10457995  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 53273693 - 53273782
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||| || ||||  |||||||| |||||||||    
T  53273693 gtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacatttt 53273782  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 46941141 - 46941055
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| |||||||| |||| || || |||||  |||||||||||||||||    
T  46941141 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 52627986 - 52628080
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttcttc 95  Q
    ||||| ||||||||||||||||||||||| | | ||||||||| | ||||||||| ||| |||||||||||  |||||| |||||||||| ||||    
T  52627986 gtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattttccttc 52628080  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4190274 - 4190363
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||| || ||||| |||  | ||||||||| | | |||||||||||  |||||||||||||||||    
T  4190274 gtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 4190363  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34791920 - 34791831
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||  ||||||||||||||||||| | | ||||||| | | |||||||||||  |||||||||||||||||    
T  34791920 gtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacatttt 34791831  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 40480837 - 40480751
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| |||||||||||  |  |||||| |||||  |||||||||||||||||    
T  40480837 tggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacatttt 40480751  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 42100776 - 42100690
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| |||||||| || | || || |||||  |||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 45126940 - 45127026
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| |||||  |||| ||||||||||||    
T  45126940 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 51757684 - 51757595
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| | ||||||||| | | |||||||||||  |||| |||||| |||||    
T  51757684 gtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatatttt 51757595  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 53581870 - 53581959
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttct 93  Q
    ||||||||||||||| ||| |||||| |||||||| ||| |||||||||||    | ||||| |||||| ||||||||||||||||||||    
T  53581870 tggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttct 53581959  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 54237184 - 54237098
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  54237184 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 40808953 - 40808903
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||    
T  40808953 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaat 40808903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 42394431 - 42394517
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||   || || || |||||  |||||||||||||||||    
T  42394431 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27748654 - 27748563
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    |||| ||||||||||||| |||||||||| |||||||| |||  | |||| ||| || | ||||| ||||   |||||||||||||||||||    
T  27748654 gtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttc 27748563  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 51249396 - 51249357
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatg 43  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  51249396 tggttgtgagatgaatttaccaaaatatccttaatgcatg 51249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 24688414 - 24688464
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||    
T  24688414 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaat 24688464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 47191038 - 47191123
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| ||| |||||| || ||||| |||||| |||||||| || | || || |||||  |||||||||||||||||    
T  47191038 tggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 47191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatt 88  Q
    |||||||||||||||||||| || | ||||||  || || |||||||| |||| ||||| |||||  ||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 17208165 - 17208076
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  | |||||||||||  |||||| ||||||||||    
T  17208165 gtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacatttt 17208076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32473403 - 32473492
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||| | |||||||||||  |||||||||||||||||    
T  32473403 gtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30622728 - 30622816
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||| | ||||||| | | ||||||||||| ||||||||||||||||||    
T  30622728 gtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacatttt 30622816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 5257083 - 5256993
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||| ||||||||||||||||    
T  5257083 tggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttctt 5256993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 2614661 - 2614747
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  2614661 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 41334675 - 41334761
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || |||| ||| || | ||||| |||||  |||||||||||||||||    
T  41334675 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 7617221 - 7617135
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| |||| |||    | ||||| |||||  |||||||||||||||||    
T  7617221 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 38470664 - 38470581
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||| |||||||||||||||| ||| |||| |||||| ||||||||   || ||||| |||||  |||| ||||||||||||    
T  38470664 ttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 38470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 22512393 - 22512343
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||||||||| |||||||| |||||  ||||||||    
T  22512393 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaat 22512343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 45728 - 45819
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| | | |||||||||||  |||||||||||||||||||    
T  45728 gtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 45819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 27441633 - 27441542
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| | | |||||||||||  |||||||||||||||||||    
T  27441633 gtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 27441542  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33242494 - 33242405
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| | ||||||||||   |||||||||||||||||    
T  33242494 gtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacatttt 33242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33254004 - 33253915
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||   |||||||||||||||||    
T  33254004 gtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacatttt 33253915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 7367637 - 7367551
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||||||| || | ||||| ||||  |||||||| |||||||||    
T  7367637 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3213491 - 3213402
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||| |||||||||||||||| ||| |||| |||||| |||||||| |||| ||||| |||||  |||| ||||||||||||    
T  3213491 gtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 13743233 - 13743319
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||||||||||||||||    
T  13743233 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 13748733 - 13748819
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||||| ||||||||  ||| ||||| ||||   |||||||||||||||||    
T  13748733 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30014434 - 30014345
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||||||| |||  ||| || || |||||  |||||||||||||||||    
T  30014434 gtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 7273350 - 7273433
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||| |||||||||| || ||||| |||||| ||||||||||| | || || |||||  |||||||||||||||||    
T  7273350 ttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 9698345 - 9698431
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||  ||| || || |||||  |||||||||||||||||    
T  9698345 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 21280017 - 21279967
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  21280017 tggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaat 21279967  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 26670021 - 26670107
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||| | |||||||| || | || || |||||  |||||||||||||||||    
T  26670021 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 24203999 - 24204087
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttc 92  Q
    ||||||||||||||| |||||||||| |||||||| |||||  ||||||||| | | || || ||||   |||||||||||||||||||    
T  24203999 tggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttc 24204087  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 31109245 - 31109320
Alignment:
Q  15 tgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||| |||||| |||||| |||||||| |||| |||  ||| |||||||||||  |||||||||||||||||    
T  31109245 tgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacatttt 31109320  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 21293689 - 21293775
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||| |||||||||||||||| ||| |||| |||||| |||||| | | || ||||| |||||  |||| ||||||||||||    
T  21293689 tggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacatttt 21293775  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 30736067 - 30735980
Alignment:
Q  7 ttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttttctt 94  Q
    |||||||||||| |||||||||| || ||||| |||| | ||||||||  | | || || |||| | |||||||||||||||||||||    
T  30736067 ttgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttctt 30735980  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 7292835 - 7292749
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || |||| ||| || | ||||| ||||   ||||| |||||||||||    
T  7292835 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

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Target: scaffold0100 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35465 - 35554
Alignment:
Q  1 gtatggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | | ||||||||||   |||| ||||||||||||    
T  35465 gtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacatttt 35554  T

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Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 773 - 687
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| |||| | |||||||| || | || || |||||  |||||||||||||||||    
T  773 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

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Target: scaffold0385 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 11339 - 11253
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| ||||||||  ||||| ||||||||  | | ||||| |||||  ||||||||| |||||||    
T  11339 tggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacatttt 11253  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 112743 - 112657
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaataagatatatgattaaagaatgttcatgtaacatttt 90  Q
    ||||||||||||||| |||||||||| |||||||| ||| || ||||||||   || || || |||||  |||||||||||||||||    
T  112743 tggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

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Target: scaffold0187 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 14200 - 14250
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||| ||||| |||||||| ||| |||||||||||    
T  14200 tggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaat 14250  T

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Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 24528 - 24578
Alignment:
Q  4 tggttgtgagatgaatttaccaaaatgtccctaatgcatgggatgtacaat 54  Q
    ||||||||||||||| |||| ||||| |||||||| ||| |||||||||||    
T  24528 tggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaat 24578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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