View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_50 (Length: 377)
Name: NF19757_high_50
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 10990536 - 10990192
Alignment:
| Q |
16 |
catcaaacgaagaaacttttggtttggaacagaacgagaaatgctgattaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgatt |
115 |
Q |
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| T |
10990536 |
catcaaacgaagaaacttttggtttggaacagaacgagaaatgctgattaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgatt |
10990437 |
T |
|
| Q |
116 |
gattcagaagagaggataacgtatatttgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattga |
215 |
Q |
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| T |
10990436 |
gattcagaagagaggataacgtatatttgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattga |
10990337 |
T |
|
| Q |
216 |
aaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttg |
315 |
Q |
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| T |
10990336 |
aaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttg |
10990237 |
T |
|
| Q |
316 |
tgggtcaaatagttcaatggtttggtgtttgtagtcaatgttctt |
360 |
Q |
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| T |
10990236 |
tgggtcaaatagttcaatggtttggtgtttgtagtcaatgttctt |
10990192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 65 - 360
Target Start/End: Complemental strand, 11040002 - 11039707
Alignment:
| Q |
65 |
aatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtacttaaac |
164 |
Q |
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| T |
11040002 |
aatgaaacattaaacattttggtgcaaaacgaaagaggaaggtcttcaatatttgtactagaagggatagcatatatttgagaggtggaagttcttagac |
11039903 |
T |
|
| Q |
165 |
acggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcttcatagtcatatttcacgtagttgaa |
264 |
Q |
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||| |||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||| |
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| T |
11039902 |
acgaaaccgaataggaatccatccaatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcatcgtagtcatgtttcaagtagttgaa |
11039803 |
T |
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| Q |
265 |
atgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttctt |
360 |
Q |
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| T |
11039802 |
atgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttctt |
11039707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 143 - 362
Target Start/End: Complemental strand, 11024859 - 11024640
Alignment:
| Q |
143 |
tgagaggttgatgtacttaaacacggaaccaaataagaatttatgtcatctctattcaaaagcgaacaattgaaaaagtgatggtcgacaaaatcttcat |
242 |
Q |
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||||||||||| ||||||| ||| |||||||||||||||| |||||| |||||| ||||||| |||||||||| |||||||| |||||||||||| |||| |
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| T |
11024859 |
tgagaggttgaggtacttagacatggaaccaaataagaatctatgtcgtctctaatcaaaagtgaacaattgataaagtgatagtcgacaaaatcatcat |
11024760 |
T |
|
| Q |
243 |
agtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtg |
342 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||| |
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| T |
11024759 |
agtcatgtttcaagtagttgaaatgagattctgaaagattaaggttgtggatatgtttgtaaagacaactttgtggatcggatagttgaatagtttggtg |
11024660 |
T |
|
| Q |
343 |
tttgtagtcaatgttcttga |
362 |
Q |
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|||||||||||||||||||| |
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| T |
11024659 |
tttgtagtcaatgttcttga |
11024640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 230 - 360
Target Start/End: Original strand, 11000868 - 11000998
Alignment:
| Q |
230 |
acaaaatcttcatagtcatatttcacgtagttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagtt |
329 |
Q |
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||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||| |
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| T |
11000868 |
acaaattcatcatagtcatgtttcaagtagttgaaatgagattctgaaagattgaggttgttgatatgtttgcaaagacaactttgtggatcggatagtt |
11000967 |
T |
|
| Q |
330 |
caatggtttggtgtttgtagtcaatgttctt |
360 |
Q |
| |
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||| |||||||||||||||||||||||||| |
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| T |
11000968 |
gaatagtttggtgtttgtagtcaatgttctt |
11000998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 10929393 - 10929228
Alignment:
| Q |
62 |
attaatgaaacattaaacattttggtgcaaaaagaaagagggaggtagtcgattgattcagaagagaggataacgtatatttgagaggttgatgtactta |
161 |
Q |
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|||| |||||||||| |||||||||||||||| | ||||| | | | | ||| | |||| ||| ||||| ||||| ||||||||||||| || |||| |
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| T |
10929393 |
attactgaaacattatacattttggtgcaaaacgtgagaggaaagaatttgataggttcataagcagggatagcgtatgtttgagaggttgaagtgctta |
10929294 |
T |
|
| Q |
162 |
aacacggaaccaaataagaatttat---gtcatctctattcaaaagcgaacaattgaaaaagtgat |
224 |
Q |
| |
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||||||||||||||| |||| || ||||||||| ||||||| |||||||| |||||||||| |
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| T |
10929293 |
gacacggaaccaaataggaatccatatcatcatctctaatcaaaagtgaacaattaaaaaagtgat |
10929228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 10929183 - 10929081
Alignment:
| Q |
260 |
ttgaaatgagattctgaaagattgaggttgtggatatgtttgtaaagacaactttgtgggtcaaatagttcaatggtttggtgtttgtagtcaatgttct |
359 |
Q |
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||||||||||| ||||||||| |||||||||| ||| |||| || |||| |||||| || |||||||||| ||||||| | ||||||| ||||||| |
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| T |
10929183 |
ttgaaatgagaagatgaaagattaaggttgtggaactgtatgtataggcaaccttgtggatcggatagttcaatagtttggtttgtgtagtcgatgttct |
10929084 |
T |
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| Q |
360 |
tga |
362 |
Q |
| |
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||| |
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|
| T |
10929083 |
tga |
10929081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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