View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_57 (Length: 364)

Name: NF19757_high_57
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_57
NF19757_high_57
[»] chr5 (4 HSPs)
chr5 (11-349)||(13793967-13794305)
chr5 (11-112)||(21615849-21615950)
chr5 (41-112)||(19861090-19861161)
chr5 (86-115)||(1221075-1221104)
[»] chr8 (1 HSPs)
chr8 (11-115)||(23836052-23836156)
[»] chr6 (1 HSPs)
chr6 (11-111)||(18382916-18383016)
[»] scaffold0013 (1 HSPs)
scaffold0013 (41-112)||(34326-34397)
[»] scaffold0016 (1 HSPs)
scaffold0016 (11-115)||(117831-117935)
[»] chr1 (2 HSPs)
chr1 (32-112)||(20176137-20176217)
chr1 (41-112)||(13378001-13378072)
[»] chr2 (2 HSPs)
chr2 (31-103)||(25304414-25304486)
chr2 (86-115)||(24967203-24967232)
[»] chr4 (1 HSPs)
chr4 (14-112)||(12245487-12245585)
[»] scaffold0521 (1 HSPs)
scaffold0521 (41-112)||(7450-7521)
[»] scaffold0456 (1 HSPs)
scaffold0456 (41-108)||(13048-13115)
[»] scaffold0507 (1 HSPs)
scaffold0507 (52-108)||(4607-4663)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 13793967 - 13794305
Alignment:
Q  11 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13793967 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 13794066  T
Q  111 tataaggagaaaatatgctagtgggaggctactacacaagaagtttagaatcctgtttcgatgcgatggaggccaaatatgaataggatgataaggagaa 210  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13794067 tataaggagaaaatatgctagtgggaggctactatgcaagaagtttagaatcctgtttcaatgcgatggaggccaaatatgaataggatgataaggagaa 13794166  T
Q  211 aaattttcacaactacatacgcataggcaaggatgttgatgcagattgtaaaagcatcaaaacgatattgataaagttgtctatttgtgtcttccaacga 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13794167 aatttttcacaactacatacgcataggcaaggatgttgatgcagattgtaaaagcatcaaaacgatattgacaaagttgtctatttgtgtcttccaacga 13794266  T
Q  311 cccatccacgatctgtttatcgactgtggtaaagatttt 349  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13794267 cccatccacgatctgtttatcgactgtggtaaagatttt 13794305  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 21615849 - 21615950
Alignment:
Q  11 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 110  Q
    ||||||||||||| || || ||||||||| |||||||||| ||||||| ||||||| ||||||   ||||||| ||||||||||||||||||||||||||    
T  21615849 catcatcacattatcacataatcatcaataatcatcaacatcaactatttcatatagtctcaccattccatttatttctcatattccaagtaagagaaca 21615948  T
Q  111 ta 112  Q
    ||    
T  21615949 ta 21615950  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 19861090 - 19861161
Alignment:
Q  41 atcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    |||||||||| ||||||||||||||| ||||||   ||||||| || |||||||||||||| ||||||||||    
T  19861090 atcatcaacatcaactatgtcatatagtctcaccattccatttattcctcatattccaagttagagaacata 19861161  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 1221104 - 1221075
Alignment:
Q  86 ttctcatattccaagtaagagaacatataa 115  Q
    ||||||||||||||||||||||||||||||    
T  1221104 ttctcatattccaagtaagagaacatataa 1221075  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 23836052 - 23836156
Alignment:
Q  11 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 110  Q
    ||||||||||||| || || | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  23836052 catcatcacattatcacataaccatcaataatcatcaacaacaactatgtcatataatctcaccgatccatttgtttttcatattccaagtaagagaaca 23836151  T
Q  111 tataa 115  Q
    |||||    
T  23836152 tataa 23836156  T

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Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 18383016 - 18382916
Alignment:
Q  11 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 110  Q
    ||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||    
T  18383016 catcatcacattatcacataatcatcaataatcatcaacaacaactatgtcatataatctcaccaatccatttgtctctcatagtccaagtaagagaaca 18382917  T
Q  111 t 111  Q
    |    
T  18382916 t 18382916  T

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Target: scaffold0013 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 34326 - 34397
Alignment:
Q  41 atcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  34326 atcatcaacaacaactatgtcatataatcccaccgatccatttatttctcatattccaagtaagagaacata 34397  T

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Target: scaffold0016 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 117935 - 117831
Alignment:
Q  11 catcatcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaaca 110  Q
    ||||||||||| | || || ||||||||| ||||| |||| ||||||||||||||||||||||   ||||||| |||||||||||||||||||||||| |    
T  117935 catcatcacatcatcacataatcatcaataatcattaacatcaactatgtcatataatctcaccattccatttatttctcatattccaagtaagagaaaa 117836  T
Q  111 tataa 115  Q
    |||||    
T  117835 tataa 117831  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 20176137 - 20176217
Alignment:
Q  32 tcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||  ||||||||||||||||    
T  20176137 tcatcaataatcatcaacaacaactatgtcatataatctcaccgatccatttatttctcgtatctcaagtaagagaacata 20176217  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 13378072 - 13378001
Alignment:
Q  41 atcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    |||||||| ||||||||||||||||||||||||   | ||||| ||||||||||||||||||||||||||||    
T  13378072 atcatcaagaacaactatgtcatataatctcaccatttcatttatttctcatattccaagtaagagaacata 13378001  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 25304414 - 25304486
Alignment:
Q  31 atcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaa 103  Q
    ||||||||| |||||||| ||| || ||||||||||||||||| ||||||||| ||| |||||||||||||||    
T  25304414 atcatcaataatcatcaaaaacgaccatgtcatataatctcaccgatccatttatttttcatattccaagtaa 25304486  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 24967203 - 24967232
Alignment:
Q  86 ttctcatattccaagtaagagaacatataa 115  Q
    ||||||||||||||||||||||||||||||    
T  24967203 ttctcatattccaagtaagagaacatataa 24967232  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 12245585 - 12245487
Alignment:
Q  14 catcacattaacaaatgatcatcaatcatcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    |||||||||| || || |||| || | ||||||||||||||||||||||||  ||| ||| ||| ||||| ||||||||||  ||||||||||||||||    
T  12245585 catcacattatcacatcatcaccattaatcatcaacaacaactatgtcataccatcacaccgatacatttatttctcatatctcaagtaagagaacata 12245487  T

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Target: scaffold0521 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 7450 - 7521
Alignment:
Q  41 atcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaacata 112  Q
    ||||||||||  |||||||||||||| ||||||   ||||||| ||||||||| ||||| |||||| |||||    
T  7450 atcatcaacattaactatgtcatatagtctcaccattccatttatttctcatactccaactaagaggacata 7521  T

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Target: scaffold0456 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 13048 - 13115
Alignment:
Q  41 atcatcaacaacaactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaa 108  Q
    ||||| |||| |||||||||||| || || |||   |||||||||||||||||||||||| |||||||    
T  13048 atcattaacatcaactatgtcatgtagtcacaccattccatttgtttctcatattccaagcaagagaa 13115  T

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Target: scaffold0507 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 4663 - 4607
Alignment:
Q  52 caactatgtcatataatctcactgatccatttgtttctcatattccaagtaagagaa 108  Q
    |||||||||||| || || |||   |||||||||||||||||||||||| |||||||    
T  4663 caactatgtcatgtagtcacaccattccatttgtttctcatattccaagcaagagaa 4607  T

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