View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_6 (Length: 704)

Name: NF19757_high_6
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_6
NF19757_high_6
[»] chr3 (1 HSPs)
chr3 (12-689)||(38919339-38920016)


Alignment Details
Target: chr3 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 12 - 689
Target Start/End: Original strand, 38919339 - 38920016
Alignment:
Q  12 caaatattactagaaaattgatttttccaaaacctatttttgattcttctaagcttttcccgcccaaaaatatttcgggatttgaccctagaagtggtat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919339 caaatattactagaaaattgatttttccaaaacctatttttgattcttctaagcttttcccgcccaaaaatatttcgggatttgaccctagaagtggtat 38919438  T
Q  112 cgccaaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919439 cgccaaagaaaatatagtttgcaaaatttttgtttttaatgctgacgtggttgaaaatctaagagcaaaatatattaattttaatcctacacgcgttgag 38919538  T
Q  212 gctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919539 gctttatcggcttttatttggagtcgttatgttgatgttatttataatgatggtgtgcaaagaaactatggtgtggttcatgcggtgaatttgcgccaaa 38919638  T
Q  312 aaatggaaccatcattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagc 411  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919639 aaatggaaccaccattacctttagaatcgtttggtaactatttgcgatttacaataacgattccgaagatgaatagtggagaagagtgttacgggttagc 38919738  T
Q  412 gaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919739 gaagcaagtgagagatgagataaagaagattgataaagaatatgtgaagaaggttcaagaaggtaaggagcatttggaatttcttaaggaaagttttgat 38919838  T
Q  512 agagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttggttgggggaaacctatttggg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919839 agagtgattgtgaaggaggaattggttgtgtttaattttaccagtttgtgtaggtttcctttgtatgatgctgattttggttgggggaaacctatttggg 38919938  T
Q  612 ttggttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919939 ttggttcaactgctttgaattttaagaatttggttgtgtttgttgattgtaaggatgggggtggtattgaggcctatg 38920016  T

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