View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_high_61 (Length: 352)
Name: NF19757_high_61
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 54568664 - 54568359
Alignment:
| Q |
5 |
gattaagacatatagatgattaataaattagataactgcaagcaacatgttttggctactagaagcattaattattgatctagatatgatgttagtaatg |
104 |
Q |
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| T |
54568664 |
gattaagacatatagatgattaataaattagataactgcaagcaacatgttttggctactagaagcattaattattgatctagatatgatgttagtaatg |
54568565 |
T |
|
| Q |
105 |
cttagacataagatacaaatgtgtattattacaagtttgtgatgtttaccaggttgtggaaatcacatctaaatagtgaaaaattataattactaaaatt |
204 |
Q |
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| T |
54568564 |
cttagacataagatacaaatgtgtattattacaagtttgtg-----------------gaaatcacatctaaatagtgaaaaattataattactaaaatt |
54568482 |
T |
|
| Q |
205 |
actagatgagtttataagactagacagtgtcacggtaaagcggggtagaattagaagctaagacaattctcctagcacagaggaaagttttaggtgttcg |
304 |
Q |
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| T |
54568481 |
actagatgagtttataagactagacagtgtcacggtaatgcggggtagaattagaagctaagataattctccgagcacagaggaaagtcttaggtgtccg |
54568382 |
T |
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| Q |
305 |
ttacggtgtaggcaggcagtgag |
327 |
Q |
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| T |
54568381 |
ttacgatgtaggcagacagtgag |
54568359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 23855921 - 23855973
Alignment:
| Q |
273 |
ctcctagcacagaggaaagttttaggtgttcgttacggtgtaggcaggcagtg |
325 |
Q |
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| T |
23855921 |
ctccgagcacagaggaaagtcttaggtgtccgttacagtgtaggcaggcagtg |
23855973 |
T |
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