View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_high_63 (Length: 347)

Name: NF19757_high_63
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_high_63
NF19757_high_63
[»] chr2 (3 HSPs)
chr2 (12-330)||(5411881-5412192)
chr2 (230-304)||(15581997-15582071)
chr2 (131-168)||(27905539-27905576)
[»] chr1 (3 HSPs)
chr1 (40-166)||(14526882-14527010)
chr1 (57-169)||(25373020-25373134)
chr1 (231-303)||(19624034-19624106)
[»] chr5 (2 HSPs)
chr5 (230-330)||(18220442-18220543)
chr5 (126-182)||(16550860-16550916)
[»] chr4 (5 HSPs)
chr4 (86-213)||(8717679-8717809)
chr4 (122-213)||(15822535-15822626)
chr4 (79-151)||(18997599-18997673)
chr4 (78-189)||(10584019-10584134)
chr4 (79-112)||(25642214-25642247)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 5412192 - 5411881
Alignment:
Q  12 tattcttgtataactatcctcgtgtacttcattgaaacaatgaactattttgccactgacgtgttggaagtcagttggttccatggatctcgcatcgtta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5412192 tattcttgtataactatcctcgtgtacttcattgaaacaatgaactattttgccactgacgtgttggaagtcagttggttcaatggatctcgcatcgtta 5412093  T
Q  112 accaaagatggacatatgctgagggataggcggagttatatctgaagaataaaaagtaaacgattgattaagaggaaaaataccaggaataactgttgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5412092 accaaagatggacatatgctgagggataggcggagttatatctgaagaataaaaagtaaacgattgattaagaggaaaaataccaggaataactgttgaa 5411993  T
Q  212 atatttcttnnnnnnnnnctattgaaatataatcccagcacaactttctctatcttggctagtttacatttgatcacatcaacaaaacacttttacaaaa 311  Q
    |||||||||         ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5411992 atatttcttaaaaaaaaactattg-------atcccagcacaactttctctatcttggctagtttacatttgatcacatcaacaaaacacttttacaaaa 5411900  T
Q  312 cctgtttagaaattatgtc 330  Q
    |||||||||||||||||||    
T  5411899 cctgtttagaaattatgtc 5411881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 15582071 - 15581997
Alignment:
Q  230 ctattgaaatataatcccagcacaactttctctatcttggctagtttacatttgatcacatcaacaaaacacttt 304  Q
    |||||||||| | | |||||||||||||||||||| ||| || |||||| |||||||||  ||||||||| ||||    
T  15582071 ctattgaaatttcaacccagcacaactttctctattttgactcgtttacttttgatcacgccaacaaaacgcttt 15581997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 27905539 - 27905576
Alignment:
Q  131 tgagggataggcggagttatatctgaagaataaaaagt 168  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  27905539 tgagggataggtggagttatatctgaagcataaaaagt 27905576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 14526882 - 14527010
Alignment:
Q  40 tcattgaaacaatgaactattttgccactgacgtgttggaagtcagttggttccatggatctcgcatcgttaaccaaagatg--gacatatgctgaggga 137  Q
    |||| |||| ||| || ||||||||||| ||||  | |||||||||||| ||| |||||||||||||||||||||| |||||  ||| |||||| | | |    
T  14526882 tcatcgaaagaatcaaatattttgccacggacgcatcggaagtcagttgattcaatggatctcgcatcgttaaccatagatggagacgtatgctaatgaa 14526981  T
Q  138 taggcggagttatatctgaagaataaaaa 166  Q
    |||| |||||||||||||||| |||||||    
T  14526982 taggtggagttatatctgaagcataaaaa 14527010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 25373134 - 25373020
Alignment:
Q  57 tattttgccactgacgtgttggaagtcagttggttccatggatctcgcatcgttaaccaaagatg--gacatatgctgagggataggcggagttatatct 154  Q
    ||||||||||||||||| |  ||||||||||||||| || ||||||| || |||||| | |||||  ||| | || ||||||||||| ||||||||||||    
T  25373134 tattttgccactgacgtatcagaagtcagttggttcaattgatctcgtattgttaactatagatgaagacgtgtgttgagggataggtggagttatatct 25373035  T
Q  155 gaagaataaaaagta 169  Q
    |||| ||||||||||    
T  25373034 gaagcataaaaagta 25373020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 19624034 - 19624106
Alignment:
Q  231 tattgaaatataatcccagcacaactttctctatcttggctagtttacatttgatcacatcaacaaaacactt 303  Q
    ||||||||| ||||| ||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||||    
T  19624034 tattgaaatttaatctcagtacaactttctctatcttgactagtttacttttaaccacatcaacaaaacactt 19624106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 18220543 - 18220442
Alignment:
Q  230 ctattgaaatataatcccagcacaactttctctatcttggctagtttacatttgatcacatcaacaaaacacttttacaaaacct-gtttagaaattatg 328  Q
    |||| ||||| |||||||| |||||||||||||||| || ||| ||||| ||||||||  | ||||||||||||||| ||||| | ||||||||||| ||    
T  18220543 ctatagaaatctaatcccaacacaactttctctatcctgactaatttacttttgatcatgtaaacaaaacacttttataaaacttcgtttagaaattttg 18220444  T
Q  329 tc 330  Q
    ||    
T  18220443 tc 18220442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 16550916 - 16550860
Alignment:
Q  126 tatgctgagggataggcggagttatatctgaagaataaaaagtaaacgattgattaa 182  Q
    |||| |||||||||||  ||||||||||||||| |||||||||| || || ||||||    
T  16550916 tatgatgagggataggttgagttatatctgaagcataaaaagtatacaatcgattaa 16550860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 8717809 - 8717679
Alignment:
Q  86 ttggttccatggatctcgcatcgttaaccaaagatggaca--tatgctgagggataggcggagttatatctgaagaataaaaagtaaacgattgattaag 183  Q
    ||||||| ||| |||| ||||||||||||| |||  || |  |||| ||||||||||| | |||||||| ||||| |||||||||| || || |||||||    
T  8717809 ttggttcaatgaatcttgcatcgttaaccagagacagagacgtatgatgagggataggtgaagttatatttgaagcataaaaagtatacaatcgattaag 8717710  T
Q  184 ag-gaaaaataccaggaataactgttgaaat 213  Q
    ||  |||||||| || |||||||||||||||    
T  8717709 agaaaaaaatacaagaaataactgttgaaat 8717679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 15822535 - 15822626
Alignment:
Q  122 gacatatgctgagggataggcggagttatatctgaagaataaaaagtaaacgattgattaagaggaaaaataccaggaataactgttgaaat 213  Q
    ||||| |||||||||| |||  |||| ||||| |||| || ||||||| ||||||||||||||||||  |||| |||||||||| |||||||    
T  15822535 gacatctgctgagggacaggttgagtcatatcagaagcatgaaaagtatacgattgattaagaggaatcatacgaggaataactattgaaat 15822626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 18997599 - 18997673
Alignment:
Q  79 aagtcagttggttccatggatctcgcatcgttaaccaaagatg--gacatatgctgagggataggcggagttata 151  Q
    |||||||||||||| |||||||||||||||||||||| |||||  ||| ||||||||| |||||  |||||||||    
T  18997599 aagtcagttggttcaatggatctcgcatcgttaaccatagatggagacgtatgctgagagatagatggagttata 18997673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 10584019 - 10584134
Alignment:
Q  78 gaagtcagttggttccatggatctcgcatcgttaaccaaaga---tgga--catatgctgagggataggcggagttatatctgaagaataaaaagtaaac 172  Q
    ||||||||||||||| || ||||||||||||||||||| |||   ||||    |||||| | ||||||| ||||||||||||||   ||||||| || ||    
T  10584019 gaagtcagttggttcgatagatctcgcatcgttaaccagagatattggaggtgtatgctaaaggataggtggagttatatctgagacataaaaa-tatac 10584117  T
Q  173 gattgattaagaggaaa 189  Q
     ||||||||||||||||    
T  10584118 aattgattaagaggaaa 10584134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 25642214 - 25642247
Alignment:
Q  79 aagtcagttggttccatggatctcgcatcgttaa 112  Q
    |||||||||||||| |||||||||||||||||||    
T  25642214 aagtcagttggttcaatggatctcgcatcgttaa 25642247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University